RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus str. psy62] (186 letters) >d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]} Length = 105 Score = 64.6 bits (157), Expect = 5e-12 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 3/92 (3%) Query: 14 RYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKD 73 Y+ + F + E ++ D ++ A + ++ + + L S I V Sbjct: 9 PYAKAAFDFAVEHQSVERWQDMLAFA-AEVTKNEQMAELLSGALAPETLAESFIA--VCG 65 Query: 74 AHFCAITANFLRILVANGRLSVLPAIIKSFRA 105 N +R++ NGRL+ LP +++ F Sbjct: 66 EQLDENGQNLIRVMAENGRLNALPDVLEQFIH 97 >d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 Score = 24.3 bits (53), Expect = 6.2 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 35 DISRLEALLMESADLRFFIHNP 56 I RLE +L A ++F I P Sbjct: 62 GIPRLEKILRNKAKIKFIIKKP 83 >d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]} Length = 157 Score = 24.1 bits (52), Expect = 7.1 Identities = 6/21 (28%), Positives = 8/21 (38%) Query: 87 LVANGRLSVLPAIIKSFRAVC 107 L RLSV P + + Sbjct: 129 LFTQRRLSVQPVSASEYAYIL 149 >d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]} Length = 146 Score = 24.1 bits (52), Expect = 7.2 Identities = 9/21 (42%), Positives = 12/21 (57%) Query: 87 LVANGRLSVLPAIIKSFRAVC 107 LV + RLSV P + + VC Sbjct: 113 LVTSMRLSVQPVTEEEYLEVC 133 >d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K), catalytic domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 369 Score = 23.9 bits (51), Expect = 7.8 Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 9/111 (8%) Query: 28 VLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVI----DDLVKDAHFCAITANF 83 +V + + + L F +P + +I DDL +D I Sbjct: 68 AGALVIEKCKVMASKKKPL-WLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIM 126 Query: 84 LRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGE 134 I + + + + ++ V+ + ++ +QQ+ +G Sbjct: 127 ESIWETESL----DLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGN 173 >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278 Score = 24.1 bits (52), Expect = 7.9 Identities = 10/31 (32%), Positives = 15/31 (48%) Query: 76 FCAITANFLRILVANGRLSVLPAIIKSFRAV 106 FC I N + + + RL L I+K R + Sbjct: 34 FCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.327 0.141 0.401 Gapped Lambda K H 0.267 0.0435 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 659,385 Number of extensions: 28393 Number of successful extensions: 88 Number of sequences better than 10.0: 1 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 11 Length of query: 186 Length of database: 2,407,596 Length adjustment: 80 Effective length of query: 106 Effective length of database: 1,309,196 Effective search space: 138774776 Effective search space used: 138774776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 50 (23.8 bits)