RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit
delta [Candidatus Liberibacter asiaticus str. psy62]
         (186 letters)



>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the
           F1F0-ATP synthase {Escherichia coli [TaxId: 562]}
          Length = 105

 Score = 64.6 bits (157), Expect = 5e-12
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 14  RYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKD 73
            Y+ + F  + E   ++   D ++   A + ++  +   +   L       S I   V  
Sbjct: 9   PYAKAAFDFAVEHQSVERWQDMLAFA-AEVTKNEQMAELLSGALAPETLAESFIA--VCG 65

Query: 74  AHFCAITANFLRILVANGRLSVLPAIIKSFRA 105
                   N +R++  NGRL+ LP +++ F  
Sbjct: 66  EQLDENGQNLIRVMAENGRLNALPDVLEQFIH 97


>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 99

 Score = 24.3 bits (53), Expect = 6.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 35 DISRLEALLMESADLRFFIHNP 56
           I RLE +L   A ++F I  P
Sbjct: 62 GIPRLEKILRNKAKIKFIIKKP 83


>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870
           {Leishmania major [TaxId: 5664]}
          Length = 157

 Score = 24.1 bits (52), Expect = 7.1
 Identities = 6/21 (28%), Positives = 8/21 (38%)

Query: 87  LVANGRLSVLPAIIKSFRAVC 107
           L    RLSV P     +  + 
Sbjct: 129 LFTQRRLSVQPVSASEYAYIL 149


>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 146

 Score = 24.1 bits (52), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 87  LVANGRLSVLPAIIKSFRAVC 107
           LV + RLSV P   + +  VC
Sbjct: 113 LVTSMRLSVQPVTEEEYLEVC 133


>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
           catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 369

 Score = 23.9 bits (51), Expect = 7.8
 Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 28  VLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVI----DDLVKDAHFCAITANF 83
              +V +    + +       L F   +P     +   +I    DDL +D     I    
Sbjct: 68  AGALVIEKCKVMASKKKPL-WLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIM 126

Query: 84  LRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGE 134
             I             +  +  +    +  ++  V+  + ++ +QQ+ +G 
Sbjct: 127 ESIWETESL----DLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGN 173


>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
           domain {Haemophilus influenzae [TaxId: 727]}
          Length = 278

 Score = 24.1 bits (52), Expect = 7.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 76  FCAITANFLRILVANGRLSVLPAIIKSFRAV 106
           FC I  N   + + + RL  L  I+K  R +
Sbjct: 34  FCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.401 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 659,385
Number of extensions: 28393
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 11
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.8 bits)