BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus str. psy62] (186 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 375 bits (964), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MSHSFALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSM 60 MSHSFALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSM Sbjct: 1 MSHSFALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSM 60 Query: 61 KDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRA 120 KDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRA Sbjct: 61 KDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRA 120 Query: 121 FSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKLGC 180 FSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKLGC Sbjct: 121 FSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKLGC 180 Query: 181 ILKEVD 186 ILKEVD Sbjct: 181 ILKEVD 186 >gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62] Length = 471 Score = 26.2 bits (56), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 119 RAFSGLSLL-QQNKLGECLEKIVGKTVILDVME-DSALMGGFIVEIGAHQIDASLRTQLL 176 R L+LL QQ L + + I K + DS L GF ++ +D LRT Sbjct: 323 RCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPE 382 Query: 177 KLGCI 181 +L + Sbjct: 383 QLSTL 387 >gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 23.9 bits (50), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 14/116 (12%) Query: 26 EGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFC-----AIT 80 +G++D S ++ + ++ I FS+K+ VI ++A ++ Sbjct: 73 DGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENE-VISSFARNAPIVKSSNMSLG 131 Query: 81 ANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECL 136 NFL LV +LPA F + M++R + + + SG +LL LGE + Sbjct: 132 INFLGFLVETAAEYLLPAKDWDFEILEMHHRRK----LDSPSGTALL----LGEAI 179 >gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter asiaticus str. psy62] Length = 692 Score = 23.1 bits (48), Expect = 2.9, Method: Compositional matrix adjust. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 83 FLRILVANGRLSVLPAIIKSFRAVCMYYRN 112 F+R+ V +G +S +PA+I S A + R Sbjct: 240 FVRLSVGDGLVSQVPALIISLSAAFLVSRT 269 >537021.9.peg.409_1 Length = 242 Score = 22.7 bits (47), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%) Query: 17 HSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVID 68 + + +SN+E + ++SD IS AL L FF FS RR +I+ Sbjct: 193 YEILEISNDEDIETLISDIISNRTAL-----KLIFF----FFSYLWRRKIIE 235 >gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 442 Score = 22.3 bits (46), Expect = 4.8, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Query: 134 ECLEKIVGKTVILDVMEDSALMG----GFIVEIGAHQI 167 + L+KI GK +I VME A G ++ GA +I Sbjct: 24 KVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEI 61 >gi|254781040|ref|YP_003065453.1| hypothetical protein CLIBASIA_04710 [Candidatus Liberibacter asiaticus str. psy62] Length = 143 Score = 21.6 bits (44), Expect = 9.2, Method: Compositional matrix adjust. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 86 ILVANGRLSVLPAIIKSFRAVC 107 IL+ + RLSV P + VC Sbjct: 112 ILIVSSRLSVQPVTTDEYLEVC 133 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.327 0.141 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,335 Number of Sequences: 1233 Number of extensions: 4273 Number of successful extensions: 15 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 8 length of query: 186 length of database: 328,796 effective HSP length: 69 effective length of query: 117 effective length of database: 243,719 effective search space: 28515123 effective search space used: 28515123 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 36 (18.5 bits)