HHsearch alignment for GI: 254780619 and conserved domain: COG0514
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=99.44 E-value=1.4e-10 Score=99.91 Aligned_cols=316 Identities=23% Similarity=0.309 Sum_probs=198.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 88378999999987520489619984475315799999999998514684799715210013445554303897689962
Q gi|254780619|r 199 LDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWH 278 (731)
Q Consensus 199 Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~H 278 (731)
T Consensus 18 FR~gQ~evI~~~l~g~d---~lvvm--PTGgGKSlCyQ--iPAll~~G-~TLVVSPLiSLM~DQV~~l~~~-Gi~A~~ln 88 (590)
T COG0514 18 FRPGQQEIIDALLSGKD---TLVVM--PTGGGKSLCYQ--IPALLLEG-LTLVVSPLISLMKDQVDQLEAA-GIRAAYLN 88 (590)
T ss_pred CCCCHHHHHHHHHCCCC---EEEEC--CCCCCCCHHHH--HHHHHCCC-CEEEECCHHHHHHHHHHHHHHC-CCEEEHHH
T ss_conf 38888999999965886---79985--38987106743--67886599-7899785688899999999975-96520442
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEC----CHHHHHH---HCCCEEEEEEECCCCCCHHCC-CCCCCHHHHHHHHHHHCC
Q ss_conf 35572356678999971997399940----0121100---100013677405532100002-443224899999751103
Q gi|254780619|r 279 SSLSTSMREKIWRQVARGAISVIVGV----RSALFLP---FKKLGLIVIDEEHDISYKQEE-GILYNARDMSIVRGKIES 350 (731)
Q Consensus 279 S~ls~~eR~~~w~~i~~G~~~IVIGt----RSAif~P---~~nLglIIvDEEHd~sykq~~-~pry~aRdvA~~Ra~~~~ 350 (731)
T Consensus 89 S~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiS--qWGhdFRP~Y~~lg~l~~~~~~ 166 (590)
T COG0514 89 STLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCIS--QWGHDFRPDYRRLGRLRAGLPN 166 (590)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHH--HCCCCCCHHHHHHHHHHHHCCC
T ss_conf 43678779999999864964599988136317689999970887569962177776--4177437768999999851799
Q ss_pred CCEECCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 210000245432467753212344412432---23676543321102222332224547989999998862265517997
Q gi|254780619|r 351 FPVVLVSATPSIESRVNGISRRYHSVHLST---RYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLLF 427 (731)
Q Consensus 351 ~~lilgSATPSles~~~~~~g~~~~~~l~~---R~~~~~~P~i~ivDm~~~~~~~~~~lS~~l~~~i~~~l~~g~qvll~ 427 (731)
T Consensus 167 ~p~~AlTATA~~~v~~DI~~----~L~l~~~~~~~~sfdRpNi~~----------------~v~~----~~~~~~q~~fi 222 (590)
T COG0514 167 PPVLALTATATPRVRDDIRE----QLGLQDANIFRGSFDRPNLAL----------------KVVE----KGEPSDQLAFL 222 (590)
T ss_pred CCEEEEECCCCHHHHHHHHH----HHCCCCCCEEEECCCCCHHHH----------------HHHH----CCCHHHHHHHH
T ss_conf 97799737898678999999----846788664871589852345----------------5642----56478889998
Q ss_pred E---CCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHH
Q ss_conf 4---2220000002356543431014652012113578320000210244655566678741100135428998888520
Q gi|254780619|r 428 L---NRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCE 504 (731)
Q Consensus 428 l---nRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~ 504 (731)
T Consensus 223 ~~~~~~~~~~GIIY-------------------------------------------c~sR-------k~~E~ia~~L~~ 252 (590)
T COG0514 223 ATVLPQLSKSGIIY-------------------------------------------CLTR-------KKVEELAEWLRK 252 (590)
T ss_pred HHHCCCCCCCEEEE-------------------------------------------EEEH-------HHHHHHHHHHHH
T ss_conf 74132468972899-------------------------------------------9337-------759999999997
Q ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48520001023211358678999998621257657987044302311345201233000344310245578999998754
Q gi|254780619|r 505 YFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQ 584 (731)
Q Consensus 505 ~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~q 584 (731)
T Consensus 253 ~--g~~a~~YHaGl--~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP--------~s~Es----YyQ 316 (590)
T COG0514 253 N--GISAGAYHAGL--SNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLP--------GSIES----YYQ 316 (590)
T ss_pred C--CCCEEEECCCC--CHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEECCC--------CCHHH----HHH
T ss_conf 7--97257751898--89999999999716998689996462477678884079980699--------89899----999
Q ss_pred HHHCCCCCCCCCEEEEEECCCCC-HHHHHHHHC
Q ss_conf 31102566788689999329864-888999958
Q gi|254780619|r 585 VTGRAGRFGLKSLGLIQAYQPTH-PVMQALVSG 616 (731)
Q Consensus 585 v~gRagr~~~~g~v~iQt~~p~~-~~~~~~~~~ 616 (731)
T Consensus 317 E~GRAGRDG~~a~ail-l~~~~D~~~~~~~i~~ 348 (590)
T COG0514 317 ETGRAGRDGLPAEAIL-LYSPEDIRWQRYLIEQ 348 (590)
T ss_pred HHHHCCCCCCCCEEEE-EECCCCHHHHHHHHHH
T ss_conf 9713567877021788-6063007999999985