HHsearch alignment for GI: 254780619 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=99.54 E-value=1.2e-12 Score=115.74 Aligned_cols=335 Identities=19% Similarity=0.177 Sum_probs=180.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC-
Q ss_conf 4666688378999999987520489619984475315799999999998514684799715210013445554303897-
Q gi|254780619|r 194 FSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGV- 272 (731)
Q Consensus 194 ~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~- 272 (731)
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~-~~~gvivlpTGaGKT~va~~~~~~~~~~---~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRT-ERRGVIVLPTGAGKTVVAAEAIAELKRS---TLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 35788859999999999962225-7867999679998899999999982698---8999782999999999999734886
Q ss_pred -EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHH-----HHC--CCEEEEEEECCCCCCHHCCCCCCCHHHHHHH
Q ss_conf -68996235572356678999971997399940012110-----010--0013677405532100002443224899999
Q gi|254780619|r 273 -KPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFL-----PFK--KLGLIVIDEEHDISYKQEEGILYNARDMSIV 344 (731)
Q Consensus 273 -~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~-----P~~--nLglIIvDEEHd~sykq~~~pry~aRdvA~~ 344 (731)
T Consensus 108 ~~~g~~~~~~~~~~~-----------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~-----a~--~~~~~~~~ 169 (442)
T COG1061 108 DEIGIYGGGEKELEP-----------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLP-----AP--SYRRILEL 169 (442)
T ss_pred CCCCEECCCCCCCCC-----------CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCC-----CH--HHHHHHHH
T ss_conf 766033687233577-----------7489998389764155554035666759997524578-----47--79999997
Q ss_pred HHHHCCCCE-ECC-CCCCCHHHHHHHHHHHHHHHCCC----------CCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 751103210-000-24543246775321234441243----------223676543321102222332224547989999
Q gi|254780619|r 345 RGKIESFPV-VLV-SATPSIESRVNGISRRYHSVHLS----------TRYRNSALPHLQVIDMRGQTIAQGKSLSPEMID 412 (731)
Q Consensus 345 Ra~~~~~~l-ilg-SATPSles~~~~~~g~~~~~~l~----------~R~~~~~~P~i~ivDm~~~~~~~~~~lS~~l~~ 412 (731)
T Consensus 170 ----~~~~~~~LGLTATp~R~D~~----~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~ 241 (442)
T COG1061 170 ----LSAAYPRLGLTATPEREDGG----RIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESA 241 (442)
T ss_pred ----HHCCCEEEEEECCCCCCCCC----CHHHHHHHCCCEEEECCHHHHHHCCCCCCEEEEEEEECCCHHHHHHCCHHHH
T ss_conf ----51031046771487244877----5248774057556733589983378757749999862366287774031555
Q ss_pred HHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCC--EECHHHCCCCCCCCCCCCCCCCEECC
Q ss_conf 9988622655179974222000000235654343101465201211357832--00002102446555666787411001
Q gi|254780619|r 413 GIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKL--YCHQCGHSAIYSQSCVVCGSSGKMIA 490 (731)
Q Consensus 413 ~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l--~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~ 490 (731)
T Consensus 242 ~~~~-~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~li 288 (442)
T COG1061 242 RFRE-LLRARGT---------------------LRAENEARRIAIASERKIAAVRGLLLKHA---------RGDK--TLI 288 (442)
T ss_pred HHHH-HHHHHCC---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCC--EEE
T ss_conf 5555-5543100---------------------13456777776642899999999987532---------6886--699
Q ss_pred CCCCHHHHHHHHHHCCCCCH-HHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 35428998888520485200-01023211358678999998621257657987044302311345201233000344310
Q gi|254780619|r 491 CGFGIERIAEEVCEYFPLAR-ISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTN 569 (731)
Q Consensus 491 ~G~Gte~~~e~l~~~fp~~~-v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~ 569 (731)
T Consensus 289 f~~~~~~a-~~i~~~~~~~~~~~~it~~t--~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~---- 361 (442)
T COG1061 289 FASDVEHA-YEIAKLFLAPGIVEAITGET--PKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG---- 361 (442)
T ss_pred EECCHHHH-HHHHHHHCCCCCEEEEECCC--CHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEECCCC----
T ss_conf 97577999-99999862677424665789--988999999998708952999961412665788875799977998----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC-CCE--EEEEECCCC
Q ss_conf 2455789999987543110256678-868--999932986
Q gi|254780619|r 570 ADLRSSERTFQLLSQVTGRAGRFGL-KSL--GLIQAYQPT 606 (731)
Q Consensus 570 pd~ra~E~~~qll~qv~gRagr~~~-~g~--v~iQt~~p~ 606 (731)
T Consensus 362 --------S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~ 393 (442)
T COG1061 362 --------SRRLFIQRLGRGLRPAEGKEDTLALDYSLVPD 393 (442)
T ss_pred --------CHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
T ss_conf --------79999999616634788999659999964567