HHsearch alignment for GI: 254780619 and conserved domain: COG1110

Probab=99.17  E-value=4.9e-09  Score=88.22  Aligned_cols=118  Identities=27%  Similarity=0.407  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCC---C-CEE
Q ss_conf             883789999999875204896199844753157999999999985146847997152100134455543038---9-768
Q gi|254780619|r  199 LDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRF---G-VKP  274 (731)
Q Consensus       199 Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF---~-~~v  274 (731)
T Consensus        83 ~ws~QR~WakR~~r--g~---SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~  157 (1187)
T COG1110          83 PWSAQRVWAKRLVR--GK---SFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDV  157 (1187)
T ss_pred             CHHHHHHHHHHHHC--CC---CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             60788999999873--78---44898278876547999999998755874999966789999999999998865378524


Q ss_pred             -EEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHH--H-----CCCEEEEEEEC
Q ss_conf             -9962355723566789999719973999400121100--1-----00013677405
Q gi|254780619|r  275 -AEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFLP--F-----KKLGLIVIDEE  323 (731)
Q Consensus       275 -~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~P--~-----~nLglIIvDEE  323 (731)
T Consensus       158 ~~~yh~~l~~~ekee~le~i~~gdfdIlitTs--~FL~k~~e~L~~~kFdfifVDDV  212 (1187)
T COG1110         158 LVVYHSALPTKEKEEALERIESGDFDILITTS--QFLSKRFEELSKLKFDFIFVDDV  212 (1187)
T ss_pred             EEEECCCCCHHHHHHHHHHHHCCCCCEEEEEH--HHHHHHHHHHCCCCCCEEEECCH
T ss_conf             66531236657799999998659963999747--87886699840457778998047