HHsearch alignment for GI: 254780619 and conserved domain: COG1202
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=99.35 E-value=2.2e-11 Score=106.12 Aligned_cols=294 Identities=23% Similarity=0.274 Sum_probs=162.9
Q ss_pred EEECCCCHHHHHHH-HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCC---CCEEEE--EECCCCCHHHHHHHHHH-H
Q ss_conf 98447531579999-99999985146847997152100134455543038---976899--62355723566789999-7
Q gi|254780619|r 222 LISGVTGSGKTEVY-LEIVAAVLHLGKQVLILLPEISLTSAILERFQKRF---GVKPAE--WHSSLSTSMREKIWRQV-A 294 (731)
Q Consensus 222 LL~GvTGSGKTEVY-l~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF---~~~v~v--~HS~ls~~eR~~~w~~i-~ 294 (731)
T Consensus 236 lVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~p---v~~~t 312 (830)
T COG1202 236 LVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP---VVVDT 312 (830)
T ss_pred EEEECCCCCCCHHHHHHCCHHHHHCCCEEEEEEHHHHHHCCHHHHHHHHHHCCCCEEEEEECHHHHCCCCCC---CCCCC
T ss_conf 999405777514777637387883787289973168763111899999865016627888423452246775---35689
Q ss_pred CCCCEEEEECCHHHH------HHHCCCEEEEEEECCCCCCHH-CCCCCCCHHHHHHHHHHHCCCCEECCCCCCC-HHHHH
Q ss_conf 199739994001211------001000136774055321000-0244322489999975110321000024543-24677
Q gi|254780619|r 295 RGAISVIVGVRSALF------LPFKKLGLIVIDEEHDISYKQ-EEGILYNARDMSIVRGKIESFPVVLVSATPS-IESRV 366 (731)
Q Consensus 295 ~G~~~IVIGtRSAif------~P~~nLglIIvDEEHd~sykq-~~~pry~aRdvA~~Ra~~~~~~lilgSATPS-les~~ 366 (731)
T Consensus 313 ~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHt--L~deERG~RLdGL-I~RLr~l~~~AQ~i~LSATVgNp~elA 389 (830)
T COG1202 313 SPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHT--LEDEERGPRLDGL-IGRLRYLFPGAQFIYLSATVGNPEELA 389 (830)
T ss_pred CCCCCEEEEECHHHHHHHHCCCCCCCCCEEEEEEEEE--CCCHHCCCCHHHH-HHHHHHHCCCCEEEEEEEECCCHHHHH
T ss_conf 9877679861110789987078555443599650120--4401016323528-999998677774999874338869999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCC-CCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCC--CEEEEEECCCCEEHHCCCCCCC
Q ss_conf 5321234441243223676543-321102222332224547989999998862265--5179974222000000235654
Q gi|254780619|r 367 NGISRRYHSVHLSTRYRNSALP-HLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARN--EQTLLFLNRRGYAPLTLCQVCG 443 (731)
Q Consensus 367 ~~~~g~~~~~~l~~R~~~~~~P-~i~ivDm~~~~~~~~~~lS~~l~~~i~~~l~~g--~qvll~lnRrGya~~~~C~~Cg 443 (731)
T Consensus 390 ~~l--~a~lV~y~~R----PVplErHlvf~~~e~eK~~-ii~~L~k~E~~~~sskg~rGQtIVFT~SR--------rr~h 454 (830)
T COG1202 390 KKL--GAKLVLYDER----PVPLERHLVFARNESEKWD-IIARLVKREFSTESSKGYRGQTIVFTYSR--------RRCH 454 (830)
T ss_pred HHH--CCEEEEECCC----CCCHHHEEEEECCCHHHHH-HHHHHHHHHHHHHHCCCCCCCEEEEECCH--------HHHH
T ss_conf 883--8725865588----7873670664048167778-99999999975441137677369994216--------6699
Q ss_pred CCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHH
Q ss_conf 34310146520121135783200002102446555666787411001354289988885204852000102321135867
Q gi|254780619|r 444 NRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGG 523 (731)
Q Consensus 444 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 523 (731)
T Consensus 455 ~lA------~~L~~---k--------G~~---------------a~pYHaGL~y~e------------------------ 478 (830)
T COG1202 455 ELA------DALTG---K--------GLK---------------AAPYHAGLPYKE------------------------ 478 (830)
T ss_pred HHH------HHHHC---C--------CCC---------------CCCCCCCCCHHH------------------------
T ss_conf 999------88610---7--------866---------------654437986788------------------------
Q ss_pred HHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCEEEEE
Q ss_conf 8999998621257657987044302311345201233000344310245578999998754311025667--88689999
Q gi|254780619|r 524 RLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFG--LKSLGLIQ 601 (731)
Q Consensus 524 ~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~--~~g~v~iQ 601 (731)
T Consensus 479 -Rk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQ-VIF---EsLaMG~~WLs~----~EF~QM~GRAGRp~yHdrGkVyll 549 (830)
T COG1202 479 -RKSVERAFAAQELAAVVTTAALAAGVDFPASQ-VIF---ESLAMGIEWLSV----REFQQMLGRAGRPDYHDRGKVYLL 549 (830)
T ss_pred -HHHHHHHHHCCCCCEEEEHHHHHCCCCCCHHH-HHH---HHHHCCCCCCCH----HHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf -88899997608755576424564478875189-999---998710432789----999998504699872337339999