HHsearch alignment for GI: 254780619 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=99.52 E-value=1.6e-12 Score=114.78 Aligned_cols=318 Identities=21% Similarity=0.194 Sum_probs=171.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEEECCCHHHHHHHHHHHCCCCCE
Q ss_conf 688378999999987520489619984475315799999999998514----6847997152100134455543038976
Q gi|254780619|r 198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL----GKQVLILLPEISLTSAILERFQKRFGVK 273 (731)
Q Consensus 198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~----GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~ 273 (731)
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~-~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSL-LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred CHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 113556799999873225575-1899916888719999999999753113545628996558999999999998751235
Q ss_pred E--EE-EECCCC-CHHHHHHH---------HHH-HCCCCEEEEECCHHHH---HHH-----CCC--EEEEEEECCCCCCH
Q ss_conf 8--99-623557-23566789---------999-7199739994001211---001-----000--13677405532100
Q gi|254780619|r 274 P--AE-WHSSLS-TSMREKIW---------RQV-ARGAISVIVGVRSALF---LPF-----KKL--GLIVIDEEHDISYK 329 (731)
Q Consensus 274 v--~v-~HS~ls-~~eR~~~w---------~~i-~~G~~~IVIGtRSAif---~P~-----~nL--glIIvDEEHd~syk 329 (731)
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~--- 350 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY--- 350 (733)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHC---
T ss_conf 54331001310255651701002258881242236204522206999855740466725778876467787427541---
Q ss_pred HCC-CCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECC-CCCCCCCCCCCCC
Q ss_conf 002-44322489999975110321000024543246775321234441243223676543321102-2223322245479
Q gi|254780619|r 330 QEE-GILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVID-MRGQTIAQGKSLS 407 (731)
Q Consensus 330 q~~-~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~ivD-m~~~~~~~~~~lS 407 (731)
T Consensus 351 ~~~~~~~~l~~--~i~~l~~~g~~ill~SATlP~~~-~~~l~~~~~----~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 423 (733)
T COG1203 351 ADETMLAALLA--LLEALAEAGVPVLLMSATLPPFL-KEKLKKALG----KGREVVENAKFCPKEDEPGLKRKERVDVED 423 (733)
T ss_pred CCCCHHHHHHH--HHHHHHHCCCCEEEEECCCCHHH-HHHHHHHHC----CCCEECCCCCCCCCCCCCCCCEECCHHHHC
T ss_conf 65430899999--99999968997899927899799-999999850----376121344323345543300000111320
Q ss_pred ---HHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCC-CC-
Q ss_conf ---8999999886226551799742220000002356543431014652012113578320000210244655566-67-
Q gi|254780619|r 408 ---PEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCV-VC- 482 (731)
Q Consensus 408 ---~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp-~C- 482 (731)
T Consensus 424 ~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y-----~~L------------k-----------------~~~~~v~L 469 (733)
T COG1203 424 GPQEELIELISEEVKEGKKVLVIVNTVDRAIELY-----EKL------------K-----------------EKGPKVLL 469 (733)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHH-----HHH------------H-----------------CCCCCEEE
T ss_conf 3037766556776425882899992789999999-----998------------5-----------------55895799
Q ss_pred -CCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHH
Q ss_conf -8741100135428998888520485200010232113586789999986212576579870443023113452012330
Q gi|254780619|r 483 -GSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVV 561 (731)
Q Consensus 483 -g~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il 561 (731)
T Consensus 470 lHSR--f~~~--dR~~ke~~l~~~~--------------------------~~~~~~IvVaTQVIEagvDi--------- 510 (733)
T COG1203 470 LHSR--FTLK--DREEKERELKKLF--------------------------KQNEGFIVVATQVIEAGVDI--------- 510 (733)
T ss_pred EECC--CCHH--HHHHHHHHHHHHH--------------------------HCCCCEEEEECCEEEEEECC---------
T ss_conf 8863--5576--6999999998887--------------------------53786299983459988626---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCEEEEEECCC
Q ss_conf 00344310245578999998754311025667--886899993298
Q gi|254780619|r 562 DGDLGLTNADLRSSERTFQLLSQVTGRAGRFG--LKSLGLIQAYQP 605 (731)
Q Consensus 562 ~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~--~~g~v~iQt~~p 605 (731)
T Consensus 511 dfd~mIT--e~a----PidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 511 DFDVLIT--ELA----PIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred CCCEEEE--CCC----CHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 6684663--478----756799987777415666687169983466