HHsearch alignment for GI: 254780619 and conserved domain: COG1203

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=99.52  E-value=1.6e-12  Score=114.78  Aligned_cols=318  Identities=21%  Similarity=0.194  Sum_probs=171.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEEECCCHHHHHHHHHHHCCCCCE
Q ss_conf             688378999999987520489619984475315799999999998514----6847997152100134455543038976
Q gi|254780619|r  198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL----GKQVLILLPEISLTSAILERFQKRFGVK  273 (731)
Q Consensus       198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~----GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~  273 (731)
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~-~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~  273 (733)
T COG1203         195 EGYELQEKALELILRLEKRSL-LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF  273 (733)
T ss_pred             CHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf             113556799999873225575-1899916888719999999999753113545628996558999999999998751235


Q ss_pred             E--EE-EECCCC-CHHHHHHH---------HHH-HCCCCEEEEECCHHHH---HHH-----CCC--EEEEEEECCCCCCH
Q ss_conf             8--99-623557-23566789---------999-7199739994001211---001-----000--13677405532100
Q gi|254780619|r  274 P--AE-WHSSLS-TSMREKIW---------RQV-ARGAISVIVGVRSALF---LPF-----KKL--GLIVIDEEHDISYK  329 (731)
Q Consensus       274 v--~v-~HS~ls-~~eR~~~w---------~~i-~~G~~~IVIGtRSAif---~P~-----~nL--glIIvDEEHd~syk  329 (731)
T Consensus       274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~---  350 (733)
T COG1203         274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY---  350 (733)
T ss_pred             CCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHC---
T ss_conf             54331001310255651701002258881242236204522206999855740466725778876467787427541---


Q ss_pred             HCC-CCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECC-CCCCCCCCCCCCC
Q ss_conf             002-44322489999975110321000024543246775321234441243223676543321102-2223322245479
Q gi|254780619|r  330 QEE-GILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVID-MRGQTIAQGKSLS  407 (731)
Q Consensus       330 q~~-~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~ivD-m~~~~~~~~~~lS  407 (731)
T Consensus       351 ~~~~~~~~l~~--~i~~l~~~g~~ill~SATlP~~~-~~~l~~~~~----~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  423 (733)
T COG1203         351 ADETMLAALLA--LLEALAEAGVPVLLMSATLPPFL-KEKLKKALG----KGREVVENAKFCPKEDEPGLKRKERVDVED  423 (733)
T ss_pred             CCCCHHHHHHH--HHHHHHHCCCCEEEEECCCCHHH-HHHHHHHHC----CCCEECCCCCCCCCCCCCCCCEECCHHHHC
T ss_conf             65430899999--99999968997899927899799-999999850----376121344323345543300000111320


Q ss_pred             ---HHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCC-CC-
Q ss_conf             ---8999999886226551799742220000002356543431014652012113578320000210244655566-67-
Q gi|254780619|r  408 ---PEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCV-VC-  482 (731)
Q Consensus       408 ---~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp-~C-  482 (731)
T Consensus       424 ~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y-----~~L------------k-----------------~~~~~v~L  469 (733)
T COG1203         424 GPQEELIELISEEVKEGKKVLVIVNTVDRAIELY-----EKL------------K-----------------EKGPKVLL  469 (733)
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHH-----HHH------------H-----------------CCCCCEEE
T ss_conf             3037766556776425882899992789999999-----998------------5-----------------55895799


Q ss_pred             -CCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHH
Q ss_conf             -8741100135428998888520485200010232113586789999986212576579870443023113452012330
Q gi|254780619|r  483 -GSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVV  561 (731)
Q Consensus       483 -g~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il  561 (731)
T Consensus       470 lHSR--f~~~--dR~~ke~~l~~~~--------------------------~~~~~~IvVaTQVIEagvDi---------  510 (733)
T COG1203         470 LHSR--FTLK--DREEKERELKKLF--------------------------KQNEGFIVVATQVIEAGVDI---------  510 (733)
T ss_pred             EECC--CCHH--HHHHHHHHHHHHH--------------------------HCCCCEEEEECCEEEEEECC---------
T ss_conf             8863--5576--6999999998887--------------------------53786299983459988626---------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCEEEEEECCC
Q ss_conf             00344310245578999998754311025667--886899993298
Q gi|254780619|r  562 DGDLGLTNADLRSSERTFQLLSQVTGRAGRFG--LKSLGLIQAYQP  605 (731)
Q Consensus       562 ~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~--~~g~v~iQt~~p  605 (731)
T Consensus       511 dfd~mIT--e~a----PidSLIQR~GRv~R~g~~~~~~~~v~~~~~  550 (733)
T COG1203         511 DFDVLIT--ELA----PIDSLIQRAGRVNRHGKKENGKIYVYNDEE  550 (733)
T ss_pred             CCCEEEE--CCC----CHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf             6684663--478----756799987777415666687169983466