HHsearch alignment for GI: 254780619 and conserved domain: COG1439
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only].
Probab=90.84 E-value=0.12 Score=31.66 Aligned_cols=74 Identities=27% Similarity=0.352 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHCCCCE--EEEEECCCCEEHHCCCCCCCCCCCCCCCCC-EEEEEC-----CCCCCEECHHHCCCCCC
Q ss_conf 4798999999886226551--799742220000002356543431014652-012113-----57832000021024465
Q gi|254780619|r 405 SLSPEMIDGIRHTLARNEQ--TLLFLNRRGYAPLTLCQVCGNRLKCLHCSC-WLVEHR-----SKKKLYCHQCGHSAIYS 476 (731)
Q Consensus 405 ~lS~~l~~~i~~~l~~g~q--vll~lnRrGya~~~~C~~Cg~~~~C~~C~~-~l~~h~-----~~~~l~Ch~Cg~~~~~~ 476 (731)
T Consensus 82 ~LS~tDi~VlalAlel~~~~~v~l~Td--Dysv-------QNVa~~Lgi~~~~~~~~~~I~~v~~w~~rC~GC~~~f~~~ 152 (177)
T COG1439 82 NLSPTDIEVLALALELGEEVQVALATD--DYSV-------QNVALQLGLNVRSISYKGKIKKVRKWRLRCHGCKRIFPEP 152 (177)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEC--CHHH-------HHHHHHHCCEEEEEECCCCCCEEEEEEEEEECCCEECCCC
T ss_conf 157555999998886156546069954--4578-------7899972946774001576114753568984575250898
Q ss_pred -CCCCCCCCCCE
Q ss_conf -55666787411
Q gi|254780619|r 477 -QSCVVCGSSGK 487 (731)
Q Consensus 477 -~~Cp~Cg~~~~ 487 (731)
T Consensus 153 ~~~Cp~CG~~~~ 164 (177)
T COG1439 153 KDFCPICGSPLK 164 (177)
T ss_pred CCCCCCCCCCEE
T ss_conf 880778999117