HHsearch alignment for GI: 254780619 and conserved domain: COG3857

>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair].

Probab=93.86  E-value=0.13  Score=31.48  Aligned_cols=67  Identities=15%  Similarity=0.058  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHH-----------HHHHH--HHHCCCCCC---CCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHH
Q ss_conf             03443102455789999-----------98754--311025667---886899993298648889999589799999999
Q gi|254780619|r  563 GDLGLTNADLRSSERTF-----------QLLSQ--VTGRAGRFG---LKSLGLIQAYQPTHPVMQALVSGDADSFYESEI  626 (731)
Q Consensus       563 aD~~l~~pd~ra~E~~~-----------qll~q--v~gRagr~~---~~g~v~iQt~~p~~~~~~~~~~~d~~~f~~~el  626 (731)
T Consensus       912 ~~~~l~IvDYKSsa~~f~l~~vYyGL~lQlmTYLdai~q~~~~~~~~p~GalYfhm~e---P~i~~~~~~~l~~i~~el~  988 (1108)
T COG3857         912 KDGYLGIVDYKSSAHQFDLTDVYYGLSLQLMTYLDAIKQNAPEDDVKPGGALYFHMHE---PEIKLNSDLGLDKIEQELK  988 (1108)
T ss_pred             CCCCEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC---HHHHHCCCCCHHHHHHHHH
T ss_conf             5881588872365211452432144128799999999874043115644147888438---5653023444688999998


Q ss_pred             HHHHHC
Q ss_conf             999981
Q gi|254780619|r  627 RARESV  632 (731)
Q Consensus       627 ~~R~~~  632 (731)
T Consensus       989 Ks~k~k  994 (1108)
T COG3857         989 KSMKYK  994 (1108)
T ss_pred             HHHHHH
T ss_conf             756530