HHsearch alignment for GI: 254780619 and conserved domain: COG4096
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=98.98 E-value=1.3e-08 Score=84.90 Aligned_cols=323 Identities=19% Similarity=0.195 Sum_probs=178.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHCCCCCE
Q ss_conf 666883789999999875204896199844753157999999999985146--847997152100134455543038976
Q gi|254780619|r 196 LPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLG--KQVLILLPEISLTSAILERFQKRFGVK 273 (731)
Q Consensus 196 ~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~G--kqvLiLvPEI~Lt~Q~~~rl~~rF~~~ 273 (731)
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf 33622788999999999986687448999705888523199999999961414305676126789999999999639886
Q ss_pred --EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH----------HHHCC--CEEEEEEECCCCCCHHCCCC--CCC
Q ss_conf --899623557235667899997199739994001211----------00100--01367740553210000244--322
Q gi|254780619|r 274 --PAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF----------LPFKK--LGLIVIDEEHDISYKQEEGI--LYN 337 (731)
Q Consensus 274 --v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif----------~P~~n--LglIIvDEEHd~sykq~~~p--ry~ 337 (731)
T Consensus 243 ~~~n~i~~~~~------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFd 310 (875)
T COG4096 243 TKMNKIEDKKG------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFD 310 (875)
T ss_pred CCEEEECCCCC------------CCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 40123201467------------863058876037787564065456556788831289960666667876678988999
Q ss_pred HHHHHHHHHHHCCCCEECCCCCCCH----HHHHHHHHHHHH-HHCCCCCCCCCCC--CCCEECCCCCCCCCCCCC---CC
Q ss_conf 4899999751103210000245432----467753212344-4124322367654--332110222233222454---79
Q gi|254780619|r 338 ARDMSIVRGKIESFPVVLVSATPSI----ESRVNGISRRYH-SVHLSTRYRNSAL--PHLQVIDMRGQTIAQGKS---LS 407 (731)
Q Consensus 338 aRdvA~~Ra~~~~~~lilgSATPSl----es~~~~~~g~~~-~~~l~~R~~~~~~--P~i~ivDm~~~~~~~~~~---lS 407 (731)
T Consensus 311 A~~------------~gL-TATP~~~~d~~T~~~F-~g~Pt~~YsleeAV~DG~Lvpy~vi~i~~~~--~~~G~~~~~~s 374 (875)
T COG4096 311 AAT------------QGL-TATPKETIDRSTYGFF-NGEPTYAYSLEEAVEDGFLVPYKVIRIDTDF--DLDGWKPDAGS 374 (875)
T ss_pred HHH------------HHH-CCCCCCCCCCCCCCCC-CCCCCEEECHHHHHHCCCCCCCCCEEEEEEC--CCCCCCCCCCC
T ss_conf 988------------761-2576211132310133-7970224128888521545788633766431--56674767552
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCE----ECHHHCC--CC-CCCCCC
Q ss_conf 8999999886226551799742220000002356543431014652012113578320----0002102--44-655566
Q gi|254780619|r 408 PEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLY----CHQCGHS--AI-YSQSCV 480 (731)
Q Consensus 408 ~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~----Ch~Cg~~--~~-~~~~Cp 480 (731)
T Consensus 375 e-rek~~g~~i~~dd~~---~~~~d~dr~~v~~~-------------------~~~~V~r~~~e~l~~~~~g~~~~KTIv 431 (875)
T COG4096 375 E-REKLQGEAIDEDDQN---FEARDFDRTLVIPF-------------------RTETVARELTEYLKRGATGDEIGKTIV 431 (875)
T ss_pred H-HHHHHCCCCCCCCCC---CCCCCCCHHEECCC-------------------HHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 3-233313436865446---33355320000312-------------------478999999998425668886684589
Q ss_pred CCCCCCEECCCCCCHHHHHHHHHHCCCCCH---HHHCCCCCCCCHHHHHHHHHHHCC--CCCCEEEEEHHHCCCCCCCCC
Q ss_conf 678741100135428998888520485200---010232113586789999986212--576579870443023113452
Q gi|254780619|r 481 VCGSSGKMIACGFGIERIAEEVCEYFPLAR---ISILSSDLEGGGGRLQLQLSAIAK--GEIDIIIGTQLVAKGHNFPRM 555 (731)
Q Consensus 481 ~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~---v~~~d~d~~~~~~~~~~~~~~~~~--~~~~ilvgTq~i~kg~~fp~v 555 (731)
T Consensus 432 Fa~n~-------dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~----~Id~f~~ke~~P~IaitvdlL~TGiDvpev 500 (875)
T COG4096 432 FAKNH-------DHAERIREALVNEYPEYNGRYAMKITGDAEQAQA----LIDNFIDKEKYPRIAITVDLLTTGVDVPEV 500 (875)
T ss_pred EEECC-------HHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHH----HHHHHHHCCCCCCEEEEHHHHHCCCCCHHE
T ss_conf 96270-------7899999999874801067459998444065689----999887437898358761245427876220
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 0123300034431024557899999875431102566
Q gi|254780619|r 556 SLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRF 592 (731)
Q Consensus 556 ~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~ 592 (731)
T Consensus 501 ~nlVF--------~r~V~SktkF~----QMvGRGTRl 525 (875)
T COG4096 501 VNLVF--------DRKVRSKTKFK----QMVGRGTRL 525 (875)
T ss_pred EEEEE--------HHHHHHHHHHH----HHHCCCCCC
T ss_conf 45643--------14446689999----986676543