HHsearch alignment for GI: 254780619 and conserved domain: COG4096

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=98.98  E-value=1.3e-08  Score=84.90  Aligned_cols=323  Identities=19%  Similarity=0.195  Sum_probs=178.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHCCCCCE
Q ss_conf             666883789999999875204896199844753157999999999985146--847997152100134455543038976
Q gi|254780619|r  196 LPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLG--KQVLILLPEISLTSAILERFQKRFGVK  273 (731)
Q Consensus       196 ~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~G--kqvLiLvPEI~Lt~Q~~~rl~~rF~~~  273 (731)
T Consensus       163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~  242 (875)
T COG4096         163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG  242 (875)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf             33622788999999999986687448999705888523199999999961414305676126789999999999639886


Q ss_pred             --EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH----------HHHCC--CEEEEEEECCCCCCHHCCCC--CCC
Q ss_conf             --899623557235667899997199739994001211----------00100--01367740553210000244--322
Q gi|254780619|r  274 --PAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF----------LPFKK--LGLIVIDEEHDISYKQEEGI--LYN  337 (731)
Q Consensus       274 --v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif----------~P~~n--LglIIvDEEHd~sykq~~~p--ry~  337 (731)
T Consensus       243 ~~~n~i~~~~~------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFd  310 (875)
T COG4096         243 TKMNKIEDKKG------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFD  310 (875)
T ss_pred             CCEEEECCCCC------------CCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf             40123201467------------863058876037787564065456556788831289960666667876678988999


Q ss_pred             HHHHHHHHHHHCCCCEECCCCCCCH----HHHHHHHHHHHH-HHCCCCCCCCCCC--CCCEECCCCCCCCCCCCC---CC
Q ss_conf             4899999751103210000245432----467753212344-4124322367654--332110222233222454---79
Q gi|254780619|r  338 ARDMSIVRGKIESFPVVLVSATPSI----ESRVNGISRRYH-SVHLSTRYRNSAL--PHLQVIDMRGQTIAQGKS---LS  407 (731)
Q Consensus       338 aRdvA~~Ra~~~~~~lilgSATPSl----es~~~~~~g~~~-~~~l~~R~~~~~~--P~i~ivDm~~~~~~~~~~---lS  407 (731)
T Consensus       311 A~~------------~gL-TATP~~~~d~~T~~~F-~g~Pt~~YsleeAV~DG~Lvpy~vi~i~~~~--~~~G~~~~~~s  374 (875)
T COG4096         311 AAT------------QGL-TATPKETIDRSTYGFF-NGEPTYAYSLEEAVEDGFLVPYKVIRIDTDF--DLDGWKPDAGS  374 (875)
T ss_pred             HHH------------HHH-CCCCCCCCCCCCCCCC-CCCCCEEECHHHHHHCCCCCCCCCEEEEEEC--CCCCCCCCCCC
T ss_conf             988------------761-2576211132310133-7970224128888521545788633766431--56674767552


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCE----ECHHHCC--CC-CCCCCC
Q ss_conf             8999999886226551799742220000002356543431014652012113578320----0002102--44-655566
Q gi|254780619|r  408 PEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLY----CHQCGHS--AI-YSQSCV  480 (731)
Q Consensus       408 ~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~----Ch~Cg~~--~~-~~~~Cp  480 (731)
T Consensus       375 e-rek~~g~~i~~dd~~---~~~~d~dr~~v~~~-------------------~~~~V~r~~~e~l~~~~~g~~~~KTIv  431 (875)
T COG4096         375 E-REKLQGEAIDEDDQN---FEARDFDRTLVIPF-------------------RTETVARELTEYLKRGATGDEIGKTIV  431 (875)
T ss_pred             H-HHHHHCCCCCCCCCC---CCCCCCCHHEECCC-------------------HHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf             3-233313436865446---33355320000312-------------------478999999998425668886684589


Q ss_pred             CCCCCCEECCCCCCHHHHHHHHHHCCCCCH---HHHCCCCCCCCHHHHHHHHHHHCC--CCCCEEEEEHHHCCCCCCCCC
Q ss_conf             678741100135428998888520485200---010232113586789999986212--576579870443023113452
Q gi|254780619|r  481 VCGSSGKMIACGFGIERIAEEVCEYFPLAR---ISILSSDLEGGGGRLQLQLSAIAK--GEIDIIIGTQLVAKGHNFPRM  555 (731)
Q Consensus       481 ~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~---v~~~d~d~~~~~~~~~~~~~~~~~--~~~~ilvgTq~i~kg~~fp~v  555 (731)
T Consensus       432 Fa~n~-------dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~----~Id~f~~ke~~P~IaitvdlL~TGiDvpev  500 (875)
T COG4096         432 FAKNH-------DHAERIREALVNEYPEYNGRYAMKITGDAEQAQA----LIDNFIDKEKYPRIAITVDLLTTGVDVPEV  500 (875)
T ss_pred             EEECC-------HHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHH----HHHHHHHCCCCCCEEEEHHHHHCCCCCHHE
T ss_conf             96270-------7899999999874801067459998444065689----999887437898358761245427876220


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             0123300034431024557899999875431102566
Q gi|254780619|r  556 SLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRF  592 (731)
Q Consensus       556 ~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~  592 (731)
T Consensus       501 ~nlVF--------~r~V~SktkF~----QMvGRGTRl  525 (875)
T COG4096         501 VNLVF--------DRKVRSKTKFK----QMVGRGTRL  525 (875)
T ss_pred             EEEEE--------HHHHHHHHHHH----HHHCCCCCC
T ss_conf             45643--------14446689999----986676543