HHsearch alignment for GI: 254780619 and conserved domain: COG4581
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=98.82 E-value=1.3e-07 Score=77.36 Aligned_cols=143 Identities=24% Similarity=0.285 Sum_probs=105.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCE--
Q ss_conf 666883789999999875204896199844753157999999999985146847997152100134455543038976--
Q gi|254780619|r 196 LPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVK-- 273 (731)
Q Consensus 196 ~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~-- 273 (731)
T Consensus 117 ~F~LD~fQ~~a~~~Ler~e-----sVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~ 191 (1041)
T COG4581 117 PFELDPFQQEAIAILERGE-----SVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVAD 191 (1041)
T ss_pred CCCCCHHHHHHHHHHHCCC-----CEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9896789999999984799-----57997337898555999999999871894486163066420679999998600565
Q ss_pred -EEEEECCCCCHHHHHHHHHHHCCCCEEEEEC----CHHHHHH---HCCCEEEEEEECCCCCCHHC--CCCCCCHHHHHH
Q ss_conf -8996235572356678999971997399940----0121100---10001367740553210000--244322489999
Q gi|254780619|r 274 -PAEWHSSLSTSMREKIWRQVARGAISVIVGV----RSALFLP---FKKLGLIVIDEEHDISYKQE--EGILYNARDMSI 343 (731)
Q Consensus 274 -v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGt----RSAif~P---~~nLglIIvDEEHd~sykq~--~~pry~aRdvA~ 343 (731)
T Consensus 192 ~vGL~TGDv~-----------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH---yi~D~eRG~VW---EE~I 254 (1041)
T COG4581 192 MVGLMTGDVS-----------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH---YIGDRERGVVW---EEVI 254 (1041)
T ss_pred HCCCEECCEE-----------ECCCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEE---ECCCCCCCHHH---HHHH
T ss_conf 4040105434-----------27999668860999999862586101353068887666---50463221257---8999
Q ss_pred HHHHHCCCCEECCCCCCC
Q ss_conf 975110321000024543
Q gi|254780619|r 344 VRGKIESFPVVLVSATPS 361 (731)
Q Consensus 344 ~Ra~~~~~~lilgSATPS 361 (731)
T Consensus 255 i~lP-~~v~~v~LSATv~ 271 (1041)
T COG4581 255 ILLP-DHVRFVFLSATVP 271 (1041)
T ss_pred HHCC-CCCCEEEEECCCC
T ss_conf 8667-7776899967889