HHsearch alignment for GI: 254780619 and conserved domain: KOG0340

Probab=98.17  E-value=0.00024  Score=52.31  Aligned_cols=117  Identities=22%  Similarity=0.232  Sum_probs=71.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHC---CCC
Q ss_conf             688378999999987520489619984475315799999999998514---68479971521001344555430---389
Q gi|254780619|r  198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL---GKQVLILLPEISLTSAILERFQK---RFG  271 (731)
Q Consensus       198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~---GkqvLiLvPEI~Lt~Q~~~rl~~---rF~  271 (731)
T Consensus        29 ~pTpiQ~~cIpkILeGrd-----cig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~  103 (442)
T KOG0340          29 KPTPIQQACIPKILEGRD-----CIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLN  103 (442)
T ss_pred             CCCCHHHHHHHHHHCCCC-----CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCC
T ss_conf             998267652487854663-----103134688741122278777613388760699954528888888899998456456


Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECC--HHHH---------HHHCCCEEEEEEEC
Q ss_conf             7689962355723566789999719973999400--1211---------00100013677405
Q gi|254780619|r  272 VKPAEWHSSLSTSMREKIWRQVARGAISVIVGVR--SALF---------LPFKKLGLIVIDEE  323 (731)
Q Consensus       272 ~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtR--SAif---------~P~~nLglIIvDEE  323 (731)
T Consensus       104 lK~~vivGG~d~i----~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA  162 (442)
T KOG0340         104 LKVSVIVGGTDMI----MQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA  162 (442)
T ss_pred             CEEEEEECCHHHH----HHHHHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHCEEEEEECCH
T ss_conf             3279997568876----4544426698757517633354112687655255530046774130