HHsearch alignment for GI: 254780619 and conserved domain: PHA00350
>PHA00350 putative assembly protein.
Probab=96.95 E-value=0.0033 Score=43.66 Aligned_cols=125 Identities=26% Similarity=0.287 Sum_probs=71.4
Q ss_pred CEEEEECCCCHHHHH--HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC---E---EEEEECCCCCHHHHHHH
Q ss_conf 619984475315799--999999998514684799715210013445554303897---6---89962355723566789
Q gi|254780619|r 219 AVSLISGVTGSGKTE--VYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGV---K---PAEWHSSLSTSMREKIW 290 (731)
Q Consensus 219 ~~~LL~GvTGSGKTE--VYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~---~---v~v~HS~ls~~eR~~~w 290 (731)
T Consensus 2 ~I~~~~G~pGSyKS~~av~~~-ilPALk~GR~ViTNi~g--l~---le~i~k~~~~~p~~~~liri~~~~~~~~~~~~~~ 75 (402)
T PHA00350 2 MIYAIVGRPGSYKSYEAVVYH-IIPALKDGRKVITNIPG--LN---LDVFEKVFGEFPDTAELIRIVDRNLEDFESMNRP 75 (402)
T ss_pred CEEEEECCCCCCCCEEEEHHH-HHHHHHCCCEEEECCCC--CC---HHHHHHHCCCCCCCHHEEEEECCCCCCHHHHHCC
T ss_conf 179982599997660110867-68898569989977899--88---8999987178836032278743786422222020
Q ss_pred HHHHCCCCEEEEECCHHHHHHHCCCE-EEEEEECCCCC-----CHHCCC---------C----CCCHHHHHHHHHHHCCC
Q ss_conf 99971997399940012110010001-36774055321-----000024---------4----32248999997511032
Q gi|254780619|r 291 RQVARGAISVIVGVRSALFLPFKKLG-LIVIDEEHDIS-----YKQEEG---------I----LYNARDMSIVRGKIESF 351 (731)
Q Consensus 291 ~~i~~G~~~IVIGtRSAif~P~~nLg-lIIvDEEHd~s-----ykq~~~---------p----ry~aRdvA~~Ra~~~~~ 351 (731)
T Consensus 76 f~----------------W~p---~galiviDE~q~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~HRh~~w 136 (402)
T PHA00350 76 FS----------------WRP---RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNW 136 (402)
T ss_pred CC----------------CCC---CCCEEEEECHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 12----------------367---77789996313324654330023321266642000267884569999997321586
Q ss_pred CEECCCCCCCHHHHHHHHH
Q ss_conf 1000024543246775321
Q gi|254780619|r 352 PVVLVSATPSIESRVNGIS 370 (731)
Q Consensus 352 ~lilgSATPSles~~~~~~ 370 (731)
T Consensus 137 DI~L~--Tp~~~~i~~~ir 153 (402)
T PHA00350 137 DIILL--TPNIRKIHSDIR 153 (402)
T ss_pred CEEEE--CCCHHHHHHHHH
T ss_conf 67996--788789859999