HHsearch alignment for GI: 254780619 and conserved domain: PHA00350

>PHA00350 putative assembly protein.
Probab=96.95  E-value=0.0033  Score=43.66  Aligned_cols=125  Identities=26%  Similarity=0.287  Sum_probs=71.4

Q ss_pred             CEEEEECCCCHHHHH--HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC---E---EEEEECCCCCHHHHHHH
Q ss_conf             619984475315799--999999998514684799715210013445554303897---6---89962355723566789
Q gi|254780619|r  219 AVSLISGVTGSGKTE--VYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGV---K---PAEWHSSLSTSMREKIW  290 (731)
Q Consensus       219 ~~~LL~GvTGSGKTE--VYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~---~---v~v~HS~ls~~eR~~~w  290 (731)
T Consensus         2 ~I~~~~G~pGSyKS~~av~~~-ilPALk~GR~ViTNi~g--l~---le~i~k~~~~~p~~~~liri~~~~~~~~~~~~~~   75 (402)
T PHA00350          2 MIYAIVGRPGSYKSYEAVVYH-IIPALKDGRKVITNIPG--LN---LDVFEKVFGEFPDTAELIRIVDRNLEDFESMNRP   75 (402)
T ss_pred             CEEEEECCCCCCCCEEEEHHH-HHHHHHCCCEEEECCCC--CC---HHHHHHHCCCCCCCHHEEEEECCCCCCHHHHHCC
T ss_conf             179982599997660110867-68898569989977899--88---8999987178836032278743786422222020


Q ss_pred             HHHHCCCCEEEEECCHHHHHHHCCCE-EEEEEECCCCC-----CHHCCC---------C----CCCHHHHHHHHHHHCCC
Q ss_conf             99971997399940012110010001-36774055321-----000024---------4----32248999997511032
Q gi|254780619|r  291 RQVARGAISVIVGVRSALFLPFKKLG-LIVIDEEHDIS-----YKQEEG---------I----LYNARDMSIVRGKIESF  351 (731)
Q Consensus       291 ~~i~~G~~~IVIGtRSAif~P~~nLg-lIIvDEEHd~s-----ykq~~~---------p----ry~aRdvA~~Ra~~~~~  351 (731)
T Consensus        76 f~----------------W~p---~galiviDE~q~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~HRh~~w  136 (402)
T PHA00350         76 FS----------------WRP---RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNW  136 (402)
T ss_pred             CC----------------CCC---CCCEEEEECHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             12----------------367---77789996313324654330023321266642000267884569999997321586


Q ss_pred             CEECCCCCCCHHHHHHHHH
Q ss_conf             1000024543246775321
Q gi|254780619|r  352 PVVLVSATPSIESRVNGIS  370 (731)
Q Consensus       352 ~lilgSATPSles~~~~~~  370 (731)
T Consensus       137 DI~L~--Tp~~~~i~~~ir  153 (402)
T PHA00350        137 DIILL--TPNIRKIHSDIR  153 (402)
T ss_pred             CEEEE--CCCHHHHHHHHH
T ss_conf             67996--788789859999