HHsearch alignment for GI: 254780619 and conserved domain: PRK00254
>PRK00254 ski2-like helicase; Provisional.
Probab=99.74 E-value=8.3e-16 Score=139.97 Aligned_cols=378 Identities=20% Similarity=0.216 Sum_probs=205.8
Q ss_pred HHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 70999899975245572234455410235665434466668837899999998752048961998447531579999999
Q gi|254780619|r 159 ASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEI 238 (731)
Q Consensus 159 ~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~l 238 (731)
T Consensus 5 ~l~~~~~~~~~~~~~gI~---------------------~l~p~Q~e~l~~g--~~-~g-~NllvsaPT~sGKTlvAEla 59 (717)
T PRK00254 5 ELRVDERIKEILKERGIE---------------------ELYPPQAEALTSG--VL-EG-KNLLIAIPTASGKTLIAEIA 59 (717)
T ss_pred HCCCCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHH--HC-CC-CCEEEECCCCCCHHHHHHHH
T ss_conf 439998999999976987---------------------2689999998742--33-69-81899899887489999999
Q ss_pred H-HHHHHCCCCEEEEECCCHHHHHHHHHHHC--CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC----CHHHHH-
Q ss_conf 9-99851468479971521001344555430--389768996235572356678999971997399940----012110-
Q gi|254780619|r 239 V-AAVLHLGKQVLILLPEISLTSAILERFQK--RFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGV----RSALFL- 310 (731)
Q Consensus 239 i-~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~--rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGt----RSAif~- 310 (731)
T Consensus 60 il~~~l~~~~k~iyi~P~kALa~EK~~~f~~~~~~g~~V~~~tGd~~~~~~---~l----~~~dIiV~T~Ek~dsl~r~~ 132 (717)
T PRK00254 60 MVNKLLREGGKAVYLVPLKALAEEKFREFKDWEVLGLRVAMATGDYDSKDE---WL----GKYDIIIATAEKFDSLLRHG 132 (717)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC---CC----CCCCEEEECHHHHHHHHHCC
T ss_conf 999998529929999267999999999998777449889897489888701---04----68999998889999999716
Q ss_pred H--HCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 0--100013677405532100002443224899999751103210000245-4324677532123444124322367654
Q gi|254780619|r 311 P--FKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSAT-PSIESRVNGISRRYHSVHLSTRYRNSAL 387 (731)
Q Consensus 311 P--~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSAT-PSles~~~~~~g~~~~~~l~~R~~~~~~ 387 (731)
T Consensus 133 ~~~l~~i~lvViDEiH~igD-~~RG~~l---E~~l~~l~-~~~qiIgLSATi~N~~~la~WL~a~--~~~~~~RP--VpL 203 (717)
T PRK00254 133 SSWIKDVKLLVADEIHLIGS-RDRGATL---EFILTHML-GRAQIIGLSATIGNPEELAEWLNAE--LIVSDWRP--VKL 203 (717)
T ss_pred HHHHHCCCEEEEECEEECCC-CCCHHHH---HHHHHHHH-CCCEEEEEEEECCCHHHHHHHHCCC--CCCCCCCC--CCE
T ss_conf 25653269899976078889-8740999---99999510-0366999963349989999982885--21568857--752
Q ss_pred CC-CEECCCCCCCCCCCC--CCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 33-211022223322245--479899999988622655179974222000000235654343101465201211357832
Q gi|254780619|r 388 PH-LQVIDMRGQTIAQGK--SLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKL 464 (731)
Q Consensus 388 P~-i~ivDm~~~~~~~~~--~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l 464 (731)
T Consensus 204 ~~~v~~~~~--~~~~~~~~~~~-~~~~~l~~~~~~~~~~~LVF~~tR~~~e~~A~----~l--a~~~~~~~~~-~~~~~l 273 (717)
T PRK00254 204 RKGVFYQGF--VFWEDGKIDRY-NSWEELVYDAVKRGKGALIFVNMRRKAEKTAL----EL--AKKIKNLLTK-PELREL 273 (717)
T ss_pred EEEEEECCE--EEECCCCCHHH-HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHH----HH--HHHHHHHCCH-HHHHHH
T ss_conf 764420660--11045620544-30789999999749981899955799999999----99--9988763076-889999
Q ss_pred EECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHH--CCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 0000210244655566678741100135428998888520--48520001023211358678999998621257657987
Q gi|254780619|r 465 YCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCE--YFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIG 542 (731)
Q Consensus 465 ~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~--~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvg 542 (731)
T Consensus 274 ~~--------~~~~~~~~~---------~-~~~L~~~l~~GVafHHAGL~---------~~~R~lVE~~Fr~g~Ikvl~a 326 (717)
T PRK00254 274 KE--------LADSLEENP---------T-NEKLAKALRGGVAFHHAGLG---------RDERVLVEDNFRKGLIKVVVA 326 (717)
T ss_pred HH--------HHHHHHHCC---------C-CHHHHHHHHHCHHHHCCCCC---------HHHHHHHHHHHHCCCCEEEEE
T ss_conf 99--------999987376---------5-18999999708312158999---------889999999998799589981
Q ss_pred EHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCEEEEEECCCC-CHHHHHHHHCCH
Q ss_conf 044302311345201233000344310245578999998754311025667--8868999932986-488899995897
Q gi|254780619|r 543 TQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFG--LKSLGLIQAYQPT-HPVMQALVSGDA 618 (731)
Q Consensus 543 Tq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~--~~g~v~iQt~~p~-~~~~~~~~~~d~ 618 (731)
T Consensus 327 TsTLA~GVNLPAr~-VIi~~~~~~---~~~g~~~i~~~e~~QM~GRAGR~G~D~~G~~iii~~~~~~~~~~~~~~~~~~ 401 (717)
T PRK00254 327 TPTLSAGINTPAFR-VIIRDTWRY---SEFGMERIPVLEIQQMMGRAGRPKYDEVGEAIIVSTTEDPSKVMDRYIFGKP 401 (717)
T ss_pred CCHHHCCCCCCCEE-EEEECCEEE---CCCCCEECCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCC
T ss_conf 64465045776059-999265670---7997237875368886250699987888508999548578999999861896