HHsearch alignment for GI: 254780619 and conserved domain: PRK01172
>PRK01172 ski2-like helicase; Provisional.
Probab=99.76 E-value=1.8e-15 Score=137.48 Aligned_cols=369 Identities=20% Similarity=0.231 Sum_probs=203.8
Q ss_pred HCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 09998999752455722344554102356654344666688378999999987520489619984475315799999999
Q gi|254780619|r 160 SQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIV 239 (731)
Q Consensus 160 ~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li 239 (731)
T Consensus 6 ~~~~~~~~~~~~~~g~----------------------~l~p~Q~ea~~~~~~----g-kNllvsaPTgsGKTlvAe~ai 58 (674)
T PRK01172 6 LGYDDEFLNLFTGNDF----------------------ELYDHQRMAIEQLRK----G-ENVIVSVPTAAGKTLIAYSAI 58 (674)
T ss_pred CCCCHHHHHHHHHCCC----------------------CCCHHHHHHHHHHHC----C-CCEEEECCCCCCHHHHHHHHH
T ss_conf 2999799999996799----------------------889899999999977----9-959997899986999999999
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHC--CCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC----CHHHH-HH-
Q ss_conf 99851468479971521001344555430--389768996235572356678999971997399940----01211-00-
Q gi|254780619|r 240 AAVLHLGKQVLILLPEISLTSAILERFQK--RFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGV----RSALF-LP- 311 (731)
Q Consensus 240 ~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~--rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGt----RSAif-~P- 311 (731)
T Consensus 59 ~~~l~~~~k~iyi~P~kAL~~EK~~~~~~~~~~g~~v~~~tGd~~~~~~~-------~~~~~I~V~T~Ek~~sl~~~~~~ 131 (674)
T PRK01172 59 YETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPDF-------IKRYDVVILTSEKADSLIHHDPY 131 (674)
T ss_pred HHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-------CCCCCEEEECHHHHHHHHHCCCH
T ss_conf 99998589799987789999999999998873798277885388898010-------25589999878999999864950
Q ss_pred -HCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHH--HHCCCCEECCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -10001367740553210000244322489999975--1103210000245-4324677532123444124322367654
Q gi|254780619|r 312 -FKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRG--KIESFPVVLVSAT-PSIESRVNGISRRYHSVHLSTRYRNSAL 387 (731)
Q Consensus 312 -~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra--~~~~~~lilgSAT-PSles~~~~~~g~~~~~~l~~R~~~~~~ 387 (731)
T Consensus 132 ~l~~v~~vViDEiH~i~d-~~RG~~l---E~~l~kl~~l~~~~qiIgLSATi~N~~~la~WL~a~--~~~~~~RP--VpL 203 (674)
T PRK01172 132 IINDVGLIVADEIHIIGD-EDRGPTL---ETVLSSARYVNPDARILALSATVSNANELAQWLNAS--LIKSNFRP--VPL 203 (674)
T ss_pred HHCCCCEEEEECCEECCC-CCCHHHH---HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCC--EEECCCCC--CCC
T ss_conf 221369899826525068-7724999---999999985386607997157868999999883885--56479998--660
Q ss_pred CCCEECCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEE
Q ss_conf 3321102222332224-547989999998862265517997422200000023565434310146520121135783200
Q gi|254780619|r 388 PHLQVIDMRGQTIAQG-KSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYC 466 (731)
Q Consensus 388 P~i~ivDm~~~~~~~~-~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~C 466 (731)
T Consensus 204 -~~~v~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~LVF~~sR~~--------~e~~A------~~l~~~-------- 259 (674)
T PRK01172 204 -KLGILY-RKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKN--------AEDYA------EMLIQH-------- 259 (674)
T ss_pred -EEEEEE-CCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEEECHHH--------HHHHH------HHHHHH--------
T ss_conf -898883-460114704323453999999999669947999507588--------99999------999985--------
Q ss_pred CHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHH
Q ss_conf 00210244655566678741100135428998888520485200010232113586789999986212576579870443
Q gi|254780619|r 467 HQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLV 546 (731)
Q Consensus 467 h~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i 546 (731)
T Consensus 260 --~~~~~~~-~~~~~~~-------~~~~-~~L~~~l~~-----GVafHHaGL~--~~eR~lVE~~f~~g~i~vl~aT~TL 321 (674)
T PRK01172 260 --FPEFNDF-KVSSENN-------NVYD-DSLNEMLPH-----GVAFHHAGLS--NEQRRFIEEMFRNRYIKVIVATPTL 321 (674)
T ss_pred --HHHCCCH-HCCHHHH-------HCCC-HHHHHHHHC-----CEEEECCCCC--HHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf --3210100-1031543-------1120-999999962-----8283068999--8999999999986996499714467
Q ss_pred CCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCC--CCCEEEEEECCCC-CHHHHHHHHCCH
Q ss_conf 023113452012330003443--10245578999998754311025667--8868999932986-488899995897
Q gi|254780619|r 547 AKGHNFPRMSLVGVVDGDLGL--TNADLRSSERTFQLLSQVTGRAGRFG--LKSLGLIQAYQPT-HPVMQALVSGDA 618 (731)
Q Consensus 547 ~kg~~fp~v~lv~il~aD~~l--~~pd~ra~E~~~qll~qv~gRagr~~--~~g~v~iQt~~p~-~~~~~~~~~~d~ 618 (731)
T Consensus 322 AaGVNlPA-r~VIi~~~~r~~~~~~~~l-----~~~e~~QM~GRAGR~g~D~~G~~ii~~~~~~~~~~~~~~l~~~~ 392 (674)
T PRK01172 322 AAGVNLPA-RLVIVRDITRYGNGGIRYL-----SNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEP 392 (674)
T ss_pred HHHCCCCE-EEEEEEEEEEECCCCEEEC-----CHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCC
T ss_conf 65447860-5999930078179971577-----78989986135899999988708999728228999999852898