HHsearch alignment for GI: 254780619 and conserved domain: PRK04296
>PRK04296 thymidine kinase; Provisional.
Probab=92.21 E-value=0.83 Score=25.29 Aligned_cols=105 Identities=22% Similarity=0.312 Sum_probs=61.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCE
Q ss_conf 19984475315799999999998514684799715210013445554303897689962355723566789999719973
Q gi|254780619|r 220 VSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAIS 299 (731)
Q Consensus 220 ~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~ 299 (731)
T Consensus 4 L~~i~GpMfSGKTteLi~~~~~~~~~gkkvl~~kp~~D----------~Ry~~~~I~Sh~g~~~--------------~~ 59 (197)
T PRK04296 4 LYFIYGAMNSGKSTELLQRAYNYEERGMKVLVFTPAID----------DRYGEGKVVSRIGLSR--------------EA 59 (197)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCC----------CCCCCCCEECCCCCEE--------------EE
T ss_conf 99999342788899999999999987995999985344----------6577785786789834--------------68
Q ss_pred EEEECCHHHH------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECC
Q ss_conf 9994001211------00100013677405532100002443224899999751103210000
Q gi|254780619|r 300 VIVGVRSALF------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLV 356 (731)
Q Consensus 300 IVIGtRSAif------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilg 356 (731)
T Consensus 60 ~~v~~~~~i~~~~~~~~~~~~~dvI~IDEaQ--Ff~-~----~~i~~~~~~~-~~~~~~Viv~ 114 (197)
T PRK04296 60 ILISSDTDIFELIEEEHEGGKIDCVLIDEAQ--FLD-K----EQVVQLAEVV-DDLGIPVICY 114 (197)
T ss_pred EEECCHHHHHHHHHHHHCCCCCCEEEECCHH--CCC-H----HHHHHHHHHH-HHCCCEEEEE
T ss_conf 9948789999999876304785689972021--279-8----9999999999-8318589997