HHsearch alignment for GI: 254780619 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.29 E-value=0.17 Score=30.53 Aligned_cols=119 Identities=14% Similarity=0.189 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf 31579999999999851468479971521001344555430389768996235572356678999971997399940012
Q gi|254780619|r 228 GSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSA 307 (731)
Q Consensus 228 GSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSA 307 (731)
T Consensus 240 ~~~K~~~L~~ll~~~--~~~k~iIF~nt~~~~~~l~~~L~-~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTDva 316 (423)
T PRK04837 240 NEEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLA-ADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATDVA 316 (423)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEECCHHHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHH
T ss_conf 277999999999840--88746886162888999999997-659817872254579999999999976999899870043
Q ss_pred HH-HHHCCCEEEEE-EECCC-CCCHHCCCCCCCHHHHHHHHHHHCCCCEECCC
Q ss_conf 11-00100013677-40553-21000024432248999997511032100002
Q gi|254780619|r 308 LF-LPFKKLGLIVI-DEEHD-ISYKQEEGILYNARDMSIVRGKIESFPVVLVS 357 (731)
Q Consensus 308 if-~P~~nLglIIv-DEEHd-~sykq~~~pry~aRdvA~~Ra~~~~~~lilgS 357 (731)
T Consensus 317 aRGLDi~~V~~VInyD~P~~~~~YiHR-----iGR---TgRaG~~G~aitf~~ 361 (423)
T PRK04837 317 ARGLHIPDVTHVFNYDLPDDCEDYVHR-----IGR---TGRAGASGHSISFAC 361 (423)
T ss_pred HCCCCCCCCCEEEEECCCCCHHHEECC-----CCH---HHCCCCCEEEEEEEC
T ss_conf 277772679889996998974551004-----654---127899468999873