HHsearch alignment for GI: 254780619 and conserved domain: PRK04837

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.29  E-value=0.17  Score=30.53  Aligned_cols=119  Identities=14%  Similarity=0.189  Sum_probs=73.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             31579999999999851468479971521001344555430389768996235572356678999971997399940012
Q gi|254780619|r  228 GSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSA  307 (731)
Q Consensus       228 GSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSA  307 (731)
T Consensus       240 ~~~K~~~L~~ll~~~--~~~k~iIF~nt~~~~~~l~~~L~-~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTDva  316 (423)
T PRK04837        240 NEEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLA-ADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATDVA  316 (423)
T ss_pred             HHHHHHHHHHHHHHH--CCCCEEEECCHHHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHH
T ss_conf             277999999999840--88746886162888999999997-659817872254579999999999976999899870043


Q ss_pred             HH-HHHCCCEEEEE-EECCC-CCCHHCCCCCCCHHHHHHHHHHHCCCCEECCC
Q ss_conf             11-00100013677-40553-21000024432248999997511032100002
Q gi|254780619|r  308 LF-LPFKKLGLIVI-DEEHD-ISYKQEEGILYNARDMSIVRGKIESFPVVLVS  357 (731)
Q Consensus       308 if-~P~~nLglIIv-DEEHd-~sykq~~~pry~aRdvA~~Ra~~~~~~lilgS  357 (731)
T Consensus       317 aRGLDi~~V~~VInyD~P~~~~~YiHR-----iGR---TgRaG~~G~aitf~~  361 (423)
T PRK04837        317 ARGLHIPDVTHVFNYDLPDDCEDYVHR-----IGR---TGRAGASGHSISFAC  361 (423)
T ss_pred             HCCCCCCCCCEEEEECCCCCHHHEECC-----CCH---HHCCCCCEEEEEEEC
T ss_conf             277772679889996998974551004-----654---127899468999873