HHsearch alignment for GI: 254780619 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=100.00 E-value=0 Score=1565.14 Aligned_cols=694 Identities=41% Similarity=0.679 Sum_probs=652.7
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCHHCCCHHHHCCCC-CCCHHHHHH
Q ss_conf 3677763177878661637888888488758996189968999999824887678801114188840668-999899999
Q gi|254780619|r 13 CSRVIILLLQAVSGPYIYSVPSAMKVELGSIVRVPLRSRTVLGIVWYNSEEKYKIDSLKLRPIEYVFDCP-PLSRQMCEF 91 (731)
Q Consensus 13 ~~rV~Vllp~pL~~~FtY~vP~~l~i~iG~RV~VPFg~r~~~GiVv~~~~~~~~~~~~kLK~I~~VlD~~-~L~~~ll~L 91 (731)
T Consensus 3 m~ia~V~l~~pl~~~FtY~vp~~l~~~~G~rV~VpFg~r~~~GiV~~~~~~~-~~~~~~lK~I~~vld~~p~l~~~~l~l 81 (699)
T PRK05580 3 MPVARVLLPVPLPHPFDYLVPEGLEAQPGVRVRVPFGGRLVDGVVVERRDES-DVPLGKLKPIEEVLDPEPVLTPELLRL 81 (699)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCC-CCCHHCCEEHHHHCCCCCCCCHHHHHH
T ss_conf 7359999889999798169998788999708999618917999999825789-997320677665249998889999999
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99998530887889999857532233332000001333344586889999999880988787888877099989997524
Q gi|254780619|r 92 VKWVADYTFSPMGLVARMVVSALSETEKMEEKIQFTGIFPRINTVARLRVLDKIKDGKIWEKRDLIRASQVSSHVIDGLK 171 (731)
Q Consensus 92 ~~wiA~yY~~plG~vLk~aLP~~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~el~~~~~~s~~~i~~L~ 171 (731)
T Consensus 82 ~~wia~yY~~~~g~vl~~~lP~~~~-----------------~~~kq~~~l~~l~---~~~~~~~~~~~~~s~~~l~~l~ 141 (699)
T PRK05580 82 ADWVADYYLGPLGDVLRLALPPRLR-----------------RAPKQQRLLAALG---GAWTAALLEKAGVSASVLKGLA 141 (699)
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCCC-----------------CCHHHHHHHHHHC---CCCHHHHHHHCCCCHHHHHHHH
T ss_conf 9999985787799999996898632-----------------4777999998632---3242678876289889999999
Q ss_pred HCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 55722344554102356654344666688378999999987520489619984475315799999999998514684799
Q gi|254780619|r 172 AQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLI 251 (731)
Q Consensus 172 ~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLi 251 (731)
T Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~eQ~~a~~~i~~--~~~~~~~LL~GvTGSGKTevYl~li~~~l~~GkqvLi 219 (699)
T PRK05580 142 KKGLIEIVERPPLRLRDPPDPDTEPPTLNEEQAAALAAIRA--AGGFSAFLLDGVTGSGKTEVYLQAIAEALAQGKQALV 219 (699)
T ss_pred HCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 78971675321456543344456787889999999999985--5888717874789860799999999999973997899
Q ss_pred EECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCEEEEEEECCCCCCHHC
Q ss_conf 71521001344555430389768996235572356678999971997399940012110010001367740553210000
Q gi|254780619|r 252 LLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQE 331 (731)
Q Consensus 252 LvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~P~~nLglIIvDEEHd~sykq~ 331 (731)
T Consensus 220 LvPEI~lt~q~~~rl~~~fg~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAvFaP~~nLgLIIVDEEhd~SYKq~ 299 (699)
T PRK05580 220 LVPEIALTPQLLARFRARFGARVAVLHSGLSDGERYRAWLAALRGEARVVIGTRSALFAPFKNLGLIIVDEEHDDSYKQQ 299 (699)
T ss_pred EECCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCEEEEECCCCHHHCCC
T ss_conf 91767878999999998709957996488985799999999976997199973601106578984899973654544466
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHH
Q ss_conf 24432248999997511032100002454324677532123444124322367654332110222233222454798999
Q gi|254780619|r 332 EGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMI 411 (731)
Q Consensus 332 ~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~ivDm~~~~~~~~~~lS~~l~ 411 (731)
T Consensus 300 ~~Pry~ARdvA~~Ra~~~~~~liLgSaTPSlEs~~~~~~g~~~~~~l~~r~~~~~~P~v~ivDm~~~~~~~~~~ls~~l~ 379 (699)
T PRK05580 300 DGPRYHARDVAVLRAKQEGCPVVLGSATPSLESLANAESGKYHLLRLTRRAGAAALPRVEIIDMREEPLERGAGLSPPLL 379 (699)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHH
T ss_conf 68761199999999998499889616899999999997599766446532234789837933542141002575469999
Q ss_pred HHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCC
Q ss_conf 99988622655179974222000000235654343101465201211357832000021024465556667874110013
Q gi|254780619|r 412 DGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIAC 491 (731)
Q Consensus 412 ~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~ 491 (731)
T Consensus 380 ~~i~~~L~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cgs~-~l~~~ 458 (699)
T PRK05580 380 EAIREALERGEQVLLFLNRRGYAPFLLCRDCGWVARCPHCDGPLTLHRAGRRLRCHHCGYQEPIPRACPECGST-DLRAV 458 (699)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCEEECHHCCCEEECCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCC-CCCCC
T ss_conf 99999997388479995477522514745319945656789863420689833226468836575546567997-52411
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 54289988885204852000102321135867899999862125765798704430231134520123300034431024
Q gi|254780619|r 492 GFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNAD 571 (731)
Q Consensus 492 G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd 571 (731)
T Consensus 459 g~Gteri~eel~~~FP~~~i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGTqmiakG~df~~v~lv~vldaD~~l~~pd 538 (699)
T PRK05580 459 GVGTERTEEELARLFPGARVLRIDRDTTRRKGALEQLLEDFARGEADILVGTQMLAKGHDFPNVTLVGVLDADTGLFSPD 538 (699)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEECHHHHCCCCC
T ss_conf 16859999999977899988998475567863168899997468987897773345567777626998732265354888
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCHH
Q ss_conf 55789999987543110256678868999932986488899995897999999999999818888011899988459989
Q gi|254780619|r 572 LRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPTHPVMQALVSGDADSFYESEIRARESVNLPPFGRLAAVIISGTKYQ 651 (731)
Q Consensus 572 ~ra~E~~~qll~qv~gRagr~~~~g~v~iQt~~p~~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~~~~i~~~~~~~~ 651 (731)
T Consensus 539 ~ra~E~~~qll~qvagragr~~~~g~viiQt~~p~~~~~~~l~~~d~~~f~~~el~~R~~~~~PPf~~l~~i~~~~~~~~ 618 (699)
T PRK05580 539 FRAAERTFQLLTQVAGRAGRAEKPGEVLIQTYEPEHPLLQALLRWDYDAFAEAELAERREAGLPPFVRLALVRGSAKAVA 618 (699)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHEEEEECCCHH
T ss_conf 34799999999999876556788987999937999899999996899999999999999709998687517899539999
Q ss_pred HHHHHHHHHHHHCCC--CCCCEEECCCCCHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHH
Q ss_conf 999999999985734--388499817675268858823799999809938999999999986421037868999706802
Q gi|254780619|r 652 EVENYAYNLKEHAPR--SSDIVVFGPAESPLFMVRGRYRFRLLIHGKRNSNLQGFFSQMYDNTIKRSNALRVQFDIDPQN 729 (731)
Q Consensus 652 ~~~~~~~~~~~~~~~--~~~~~v~GP~~~~~~k~~~~~r~~~~ik~~~~~~l~~~l~~~~~~~~~~~~~~~~~iDvDP~~ 729 (731)
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~vlGP~~~~i~k~~~~yr~~ilik~~~~~~l~~~l~~~~~~~~~~~~~v~~~idvDP~~ 698 (699)
T PRK05580 619 KALKFAQQLALLLKPPLGEGVEVLGPVPAPIARIAGRYRWQILLRSPRRAALQAALRAWLALLSALRRKVRLSIDIDPLD 698 (699)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 99999999999876314799099898676537878906999999879779999999999998742788866999718989
Q ss_pred H
Q ss_conf 1
Q gi|254780619|r 730 F 730 (731)
Q Consensus 730 ~ 730 (731)
T Consensus 699 f 699 (699)
T PRK05580 699 F 699 (699)
T ss_pred C
T ss_conf 8