HHsearch alignment for GI: 254780619 and conserved domain: PRK05582
>PRK05582 DNA topoisomerase I; Validated.
Probab=94.31 E-value=0.037 Score=35.58 Aligned_cols=41 Identities=24% Similarity=0.477 Sum_probs=28.7
Q ss_pred CCCCCCCCEEEEECC--CCCCEECH---HHCCCCCC-----------CCCCCCCCCC
Q ss_conf 310146520121135--78320000---21024465-----------5566678741
Q gi|254780619|r 446 LKCLHCSCWLVEHRS--KKKLYCHQ---CGHSAIYS-----------QSCVVCGSSG 486 (731)
Q Consensus 446 ~~C~~C~~~l~~h~~--~~~l~Ch~---Cg~~~~~~-----------~~Cp~Cg~~~ 486 (731)
T Consensus 574 ~~Cp~Cg~~l~~r~~~~G~F~~Cs~yP~Ck~t~~~~~~~~~~~~~~~~~CP~C~~~l 630 (692)
T PRK05582 574 RKCPKCGRELVIKHGRYGEFIACSNYPKCKYTKPIEEEEKLASEELDVKCPECGGKI 630 (692)
T ss_pred CCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 877567982026726889626578998788977687644444453699799999774