HHsearch alignment for GI: 254780619 and conserved domain: PRK05595
>PRK05595 replicative DNA helicase; Provisional.
Probab=94.49 E-value=0.44 Score=27.38 Aligned_cols=130 Identities=22% Similarity=0.228 Sum_probs=75.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHCCC-CCEEEE-EECCCCCHHHHHHHHHHH-
Q ss_conf 61998447531579999999999-85146847997152100134455543038-976899-623557235667899997-
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAA-VLHLGKQVLILLPEISLTSAILERFQKRF-GVKPAE-WHSSLSTSMREKIWRQVA- 294 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~-~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF-~~~v~v-~HS~ls~~eR~~~w~~i~- 294 (731)
T Consensus 202 dLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEMs-~~ql~~R~ls~~s~i~~~~i~~g~l~~~~~~~-~~~a~~ 279 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEMS-KEQLAYKLLCSEANVDMLRLRTGNLEDKDWEN-IARASG 279 (444)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HHHHHH
T ss_conf 7799985798980799999999999866993799958899-99999999996469884423268979999999-999999
Q ss_pred -CCCCEEEEECCHHH-----------HHHHCCCEEEEEEECCCCCCHHCCC------CCCCH-----HHHHHHHHHHCCC
Q ss_conf -19973999400121-----------1001000136774055321000024------43224-----8999997511032
Q gi|254780619|r 295 -RGAISVIVGVRSAL-----------FLPFKKLGLIVIDEEHDISYKQEEG------ILYNA-----RDMSIVRGKIESF 351 (731)
Q Consensus 295 -~G~~~IVIGtRSAi-----------f~P~~nLglIIvDEEHd~sykq~~~------pry~a-----RdvA~~Ra~~~~~ 351 (731)
T Consensus 280 ~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~liiiD------YlqLi~~~~~~~~r~~ev~~isr~L-K~lAkel~i 352 (444)
T PRK05595 280 PLAAAKIYIDDTAGVSVMEMRSKCRRLKIEHGIDLILID------YLQLMSGGKSSESRQQEVSEISRSI-KALAKEMEC 352 (444)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE------HHHHCCCCCCCCCHHHHHHHHHHHH-HHHHHHHCC
T ss_conf 985489705489996489999999999987399989982------3763578988888999999999999-999999699
Q ss_pred CEECCC
Q ss_conf 100002
Q gi|254780619|r 352 PVVLVS 357 (731)
Q Consensus 352 ~lilgS 357 (731)
T Consensus 353 pvi~ls 358 (444)
T PRK05595 353 PVIALS 358 (444)
T ss_pred CEEEEC
T ss_conf 799970