HHsearch alignment for GI: 254780619 and conserved domain: PRK05636

>PRK05636 replicative DNA helicase; Provisional.
Probab=96.62  E-value=0.077  Score=33.16  Aligned_cols=131  Identities=20%  Similarity=0.292  Sum_probs=77.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHCCC-CCEE-EEEECCCCCHHHHHHHHHHH-C
Q ss_conf             19984475315799999999998-5146847997152100134455543038-9768-99623557235667899997-1
Q gi|254780619|r  220 VSLISGVTGSGKTEVYLEIVAAV-LHLGKQVLILLPEISLTSAILERFQKRF-GVKP-AEWHSSLSTSMREKIWRQVA-R  295 (731)
Q Consensus       220 ~~LL~GvTGSGKTEVYl~li~~~-L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF-~~~v-~v~HS~ls~~eR~~~w~~i~-~  295 (731)
T Consensus       269 LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs-~~ql~~Rlla~~s~V~~~~ir~g~l~~~~~~~l~~a~~~l  347 (507)
T PRK05636        269 MIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMS-KSEIVMRLLSAEAEVRLADMRGGKMDEDAWEKLVQRLGKI  347 (507)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             799973787866899999999999876993799715699-8999999999847988788855887889999999999998


Q ss_pred             CCCEEEEECCHHH-----------HHHHCCCEEEEEEECCCCCCHHCCCC--CCCHHH--HH------HHHHHHCCCCEE
Q ss_conf             9973999400121-----------10010001367740553210000244--322489--99------997511032100
Q gi|254780619|r  296 GAISVIVGVRSAL-----------FLPFKKLGLIVIDEEHDISYKQEEGI--LYNARD--MS------IVRGKIESFPVV  354 (731)
Q Consensus       296 G~~~IVIGtRSAi-----------f~P~~nLglIIvDEEHd~sykq~~~p--ry~aRd--vA------~~Ra~~~~~~li  354 (731)
T Consensus       348 ~~~pl~IdD~~~lti~~Ira~aRrlk~~~~l~livVD------YLQLm~~~~~~~~R~~ev~~ISr~LK~lAkel~vpVi  421 (507)
T PRK05636        348 AQAPIFIDDSANLTMMEIRSKARRLKQKHDLKMIVVD------YLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLI  421 (507)
T ss_pred             HHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE------HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             6198899849997699999999999861799989984------5884568888766899999999999999999799889


Q ss_pred             CCC
Q ss_conf             002
Q gi|254780619|r  355 LVS  357 (731)
Q Consensus       355 lgS  357 (731)
T Consensus       422 ~Ls  424 (507)
T PRK05636        422 AIS  424 (507)
T ss_pred             EEC
T ss_conf             971