HHsearch alignment for GI: 254780619 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=94.94 E-value=0.092 Score=32.59 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 66883789999999875204896199844753157999999999985146847997152100134455543038976899
Q gi|254780619|r 197 PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAE 276 (731)
Q Consensus 197 ~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v 276 (731)
T Consensus 79 ~~l~~~~i~~La~~--~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~-----~~~L~~~L~~a------- 144 (254)
T PRK06526 79 RSLKRDTIAHLGTL--DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT-----AAQWVARLAAA------- 144 (254)
T ss_pred CCCCHHHHHHHHCC--CHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE-----HHHHHHHHHHH-------
T ss_conf 89899999998637--17765887899899998689999999999998699679987-----79999999998-------
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCHHHH-HHHHHHHCCCCEEC
Q ss_conf 62355723566789999719973999400121100100013677405532100002443224899-99975110321000
Q gi|254780619|r 277 WHSSLSTSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDM-SIVRGKIESFPVVL 355 (731)
Q Consensus 277 ~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~P~~nLglIIvDEEHd~sykq~~~pry~aRdv-A~~Ra~~~~~~lil 355 (731)
T Consensus 145 -----------------~~------~g~~~~~~~~l~~~dLLIiDe~---g~~~~~~--~~a~~lf~li~~Rye~~S~Ii 196 (254)
T PRK06526 145 -----------------HH------AGRLQDELVKLGRIPLLIVDEV---GYIPFEA--EAANLFFQLVSSRYERASLIV 196 (254)
T ss_pred -----------------HH------CCCHHHHHHHHHCCCEEEEECC---CCCCCCH--HHHHHHHHHHHHHHCCCCEEE
T ss_conf -----------------85------5809999998513687765021---3644788--999999999999974588676
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 02454324677532
Q gi|254780619|r 356 VSATPSIESRVNGI 369 (731)
Q Consensus 356 gSATPSles~~~~~ 369 (731)
T Consensus 197 TSn~~-~~~W~~~f 209 (254)
T PRK06526 197 TSNKP-FGRWGEVF 209 (254)
T ss_pred ECCCC-HHHHHHHC
T ss_conf 65898-66888864