HHsearch alignment for GI: 254780619 and conserved domain: PRK08074
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=97.41 E-value=0.0048 Score=42.38 Aligned_cols=127 Identities=26% Similarity=0.362 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHHH----HHCCCC--
Q ss_conf 883789999999875204896199844753157999999-9999851468479971521001344555----430389--
Q gi|254780619|r 199 LDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLE-IVAAVLHLGKQVLILLPEISLTSAILER----FQKRFG-- 271 (731)
Q Consensus 199 Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~-li~~~L~~GkqvLiLvPEI~Lt~Q~~~r----l~~rF~-- 271 (731)
T Consensus 259 ~R~~Q~~ma~~V~~al~~~-~~l~iEApTGtGKTlaYLlPai~~A~~~~~~vvIST~T~~LQ~QL~~kdlp~L~~~l~~~ 337 (932)
T PRK08074 259 KREGQQEMMKEVYTALRDS-RHALIEAGTGTGKTLAYLLPAAYFAKKKEEPVIISTYTVQLQQQLLEKDIPLLQKIFPFP 337 (932)
T ss_pred CCHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5878999999999998538-847998688887136879999999997599099991628899999986899999971998
Q ss_pred CEEEEEECCC-------------------------------------------C-CHHHHHHHHHHH-------------
Q ss_conf 7689962355-------------------------------------------7-235667899997-------------
Q gi|254780619|r 272 VKPAEWHSSL-------------------------------------------S-TSMREKIWRQVA------------- 294 (731)
Q Consensus 272 ~~v~v~HS~l-------------------------------------------s-~~eR~~~w~~i~------------- 294 (731)
T Consensus 338 ~~~~llKGr~nYlCl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~del~~~~~~~~~w~~i~~~~~~~~~~~c~~ 417 (932)
T PRK08074 338 VKAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGHSPGGKQSPW 417 (932)
T ss_pred CCEEEEECCHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 60899966141277688999853545415578889999998726888688763699634889988455753202355887
Q ss_pred ------------CCCCEEEEECCHHHHHHHC-------CCEEEEEEECCCC
Q ss_conf ------------1997399940012110010-------0013677405532
Q gi|254780619|r 295 ------------RGAISVIVGVRSALFLPFK-------KLGLIVIDEEHDI 326 (731)
Q Consensus 295 ------------~G~~~IVIGtRSAif~P~~-------nLglIIvDEEHd~ 326 (731)
T Consensus 418 ~~~Cf~~~ar~~a~~AdvvI~NHalL~~d~~~~~~ilp~~~~lViDEAH~L 468 (932)
T PRK08074 418 FSRCFYQRAKNKAKFADIVITNHALLLTDFTSEEPLLPSYEHIIIDEAHHF 468 (932)
T ss_pred CCCCHHHHHHHHHHHCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHH
T ss_conf 577989999997642999998889985656414776887676997313231