HHsearch alignment for GI: 254780619 and conserved domain: PRK08116
>PRK08116 hypothetical protein; Validated.
Probab=95.75 E-value=0.094 Score=32.52 Aligned_cols=109 Identities=21% Similarity=0.432 Sum_probs=62.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 61998447531579999999999851468479971521001344555430389768996235572356678999971997
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAI 298 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~ 298 (731)
T Consensus 109 ~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~-----~~~ll~~lk~~~~~~-----~~~~---------------- 162 (262)
T PRK08116 109 VGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVN-----VPELLNRIKSTYNSE-----GKED---------------- 162 (262)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHHCC-----CCHH----------------
T ss_conf 61899898999899999999999998799399988-----999999999998635-----6101----------------
Q ss_pred EEEEECCHHHHHHHCCCEEEEEEEC---CCCCCHHCCCCCCCHHHHHHHHHHH-CCCCEECCCCCCCHHHHHH
Q ss_conf 3999400121100100013677405---5321000024432248999997511-0321000024543246775
Q gi|254780619|r 299 SVIVGVRSALFLPFKKLGLIVIDEE---HDISYKQEEGILYNARDMSIVRGKI-ESFPVVLVSATPSIESRVN 367 (731)
Q Consensus 299 ~IVIGtRSAif~P~~nLglIIvDEE---Hd~sykq~~~pry~aRdvA~~Ra~~-~~~~lilgSATPSles~~~ 367 (731)
T Consensus 163 ------~~e~l~~l~~~dLLIiDDlG~e~~t~w~~e~--lf~-----IIn~Ry~~~kptIiTTNl-~~~eL~~ 221 (262)
T PRK08116 163 ------ENEIIRALDNADLLILDDLGAEKDTEWVREK--LYN-----IIDSRYRKGLPTIFTTNL-SLEELKN 221 (262)
T ss_pred ------HHHHHHHHHCCCEEEEEHHCCCCCCHHHHHH--HHH-----HHHHHHHCCCCEEEECCC-CHHHHHH
T ss_conf ------9999998612998998322145698789999--999-----999999769998998799-9999999