HHsearch alignment for GI: 254780619 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=94.86 E-value=0.25 Score=29.29 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 66883789999999875204896199844753157999999999985146847997152100134455543038976899
Q gi|254780619|r 197 PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAE 276 (731)
Q Consensus 197 ~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v 276 (731)
T Consensus 86 p~i~~~~i~~L~~~~-~fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~-----~~~L~~~L~~-------- 151 (269)
T PRK08181 86 PMISKAQVMALAAGD-SWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----TTDLVQKLQV-------- 151 (269)
T ss_pred CCCCHHHHHHHHCCC-HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHH--------
T ss_conf 998999999996567-58864870899899998788999999999998799399978-----9999999999--------
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHH-HHHHHCCCCEEC
Q ss_conf 6235572356678999971997399940012110010001367740553210000244322489999-975110321000
Q gi|254780619|r 277 WHSSLSTSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDMSI-VRGKIESFPVVL 355 (731)
Q Consensus 277 ~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~-~Ra~~~~~~lil 355 (731)
T Consensus 152 ----------------a~~------~~~~~~~~~~l~~~dLLIiDe---~G~~~~~~--~~~~~lf~lI~~Rye~~S~II 204 (269)
T PRK08181 152 ----------------ARR------ELQLESAIAKLDKFDLLILDD---LAYVTKDQ--AETSVLFELISARYERRSILI 204 (269)
T ss_pred ----------------HHH------CCCHHHHHHHHHCCCEEEEHH---CCCCCCCH--HHHHHHHHHHHHHHCCCCEEE
T ss_conf ----------------775------583999999974446012201---05667998--999999999999857888899
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 024543246775321
Q gi|254780619|r 356 VSATPSIESRVNGIS 370 (731)
Q Consensus 356 gSATPSles~~~~~~ 370 (731)
T Consensus 205 TSn~~-~~~W~~~f~ 218 (269)
T PRK08181 205 TANQP-FGEWNRVFP 218 (269)
T ss_pred ECCCC-HHHHHHHCC
T ss_conf 88999-778877538