HHsearch alignment for GI: 254780619 and conserved domain: PRK08840
>PRK08840 replicative DNA helicase; Provisional.
Probab=94.19 E-value=0.51 Score=26.92 Aligned_cols=132 Identities=19% Similarity=0.236 Sum_probs=78.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHCCC-CCEE-EEEECCCCCHHHHHHHHHH--
Q ss_conf 619984475315799999999998-5146847997152100134455543038-9768-9962355723566789999--
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAV-LHLGKQVLILLPEISLTSAILERFQKRF-GVKP-AEWHSSLSTSMREKIWRQV-- 293 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~-L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF-~~~v-~v~HS~ls~~eR~~~w~~i-- 293 (731)
T Consensus 218 ~LiviaaRPsmGKTalalnia~n~a~~~~~~v~~fSlEMs-~~ql~~Rlls~~s~i~~~~ir~g~l~~~e~~~i~~a~~~ 296 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGI 296 (464)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHH
T ss_conf 6799983798736899999999999965996799767799-899999999985389820111488899999999999999
Q ss_pred HCCCCEEEEECCHHH-----------HHHHC-CCEEEEEEECCCCCCHHCC-CCCC-CHH--HHH------HHHHHHCCC
Q ss_conf 719973999400121-----------10010-0013677405532100002-4432-248--999------997511032
Q gi|254780619|r 294 ARGAISVIVGVRSAL-----------FLPFK-KLGLIVIDEEHDISYKQEE-GILY-NAR--DMS------IVRGKIESF 351 (731)
Q Consensus 294 ~~G~~~IVIGtRSAi-----------f~P~~-nLglIIvDEEHd~sykq~~-~pry-~aR--dvA------~~Ra~~~~~ 351 (731)
T Consensus 297 ~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~~l~lvvID------YLqL~~~~~~~~~r~~~i~~isr~lK~lAkel~v 370 (464)
T PRK08840 297 LMEKKNMYIDDSSGLTPTEVRSRARRVAREHGGLSMIMVD------YLQLMRVPALQDNRTLEIAEISRSLKALAKELNV 370 (464)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE------HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9847995885699875799999999999864898789961------8866067886403678999999999999999699
Q ss_pred CEECCC
Q ss_conf 100002
Q gi|254780619|r 352 PVVLVS 357 (731)
Q Consensus 352 ~lilgS 357 (731)
T Consensus 371 pVv~ls 376 (464)
T PRK08840 371 PVVALS 376 (464)
T ss_pred CEEEEC
T ss_conf 899963