HHsearch alignment for GI: 254780619 and conserved domain: PRK09137
>PRK09137 DNA topoisomerase I; Validated.
Probab=95.20 E-value=0.03 Score=36.30 Aligned_cols=64 Identities=23% Similarity=0.503 Sum_probs=38.9
Q ss_pred EEEEEECCCCEEHHCCC---CCCCCC------------------CCCCCCCCEEEEEC--CCCCCEE---CHHHCCCCCC
Q ss_conf 17997422200000023---565434------------------31014652012113--5783200---0021024465
Q gi|254780619|r 423 QTLLFLNRRGYAPLTLC---QVCGNR------------------LKCLHCSCWLVEHR--SKKKLYC---HQCGHSAIYS 476 (731)
Q Consensus 423 qvll~lnRrGya~~~~C---~~Cg~~------------------~~C~~C~~~l~~h~--~~~~l~C---h~Cg~~~~~~ 476 (731)
T Consensus 598 ~l~~r~g~~G~--F~~Cs~yP~Ck~t~~~~~~~~~~~~~~~~~~~~Cp~Cg~~mv~k~gr~G~f~~Cs~yP~Ck~~~~~~ 675 (761)
T PRK09137 598 PLSIKLGKRGR--FIACTGYPECKYTRNLDEDEEEAAEEEVVEGRKCPKCGSPLHIKQGRYGKFIGCSNYPECKHMEPLE 675 (761)
T ss_pred EEEEEECCCCC--EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCC
T ss_conf 23899558776--5766798766675767765555556665578869889971278614676345337998766777666
Q ss_pred ------CCCCCCCCCCEEC
Q ss_conf ------5566678741100
Q gi|254780619|r 477 ------QSCVVCGSSGKMI 489 (731)
Q Consensus 477 ------~~Cp~Cg~~~~l~ 489 (731)
T Consensus 676 k~~~~~~~CP~C~~g-~~~ 693 (761)
T PRK09137 676 KPKDTGVTCPKCKKG-ELV 693 (761)
T ss_pred CCCCCCCCCCCCCCC-CEE
T ss_conf 766677619899998-777