HHsearch alignment for GI: 254780619 and conserved domain: PRK09137

>PRK09137 DNA topoisomerase I; Validated.
Probab=95.20  E-value=0.03  Score=36.30  Aligned_cols=64  Identities=23%  Similarity=0.503  Sum_probs=38.9

Q ss_pred             EEEEEECCCCEEHHCCC---CCCCCC------------------CCCCCCCCEEEEEC--CCCCCEE---CHHHCCCCCC
Q ss_conf             17997422200000023---565434------------------31014652012113--5783200---0021024465
Q gi|254780619|r  423 QTLLFLNRRGYAPLTLC---QVCGNR------------------LKCLHCSCWLVEHR--SKKKLYC---HQCGHSAIYS  476 (731)
Q Consensus       423 qvll~lnRrGya~~~~C---~~Cg~~------------------~~C~~C~~~l~~h~--~~~~l~C---h~Cg~~~~~~  476 (731)
T Consensus       598 ~l~~r~g~~G~--F~~Cs~yP~Ck~t~~~~~~~~~~~~~~~~~~~~Cp~Cg~~mv~k~gr~G~f~~Cs~yP~Ck~~~~~~  675 (761)
T PRK09137        598 PLSIKLGKRGR--FIACTGYPECKYTRNLDEDEEEAAEEEVVEGRKCPKCGSPLHIKQGRYGKFIGCSNYPECKHMEPLE  675 (761)
T ss_pred             EEEEEECCCCC--EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCC
T ss_conf             23899558776--5766798766675767765555556665578869889971278614676345337998766777666


Q ss_pred             ------CCCCCCCCCCEEC
Q ss_conf             ------5566678741100
Q gi|254780619|r  477 ------QSCVVCGSSGKMI  489 (731)
Q Consensus       477 ------~~Cp~Cg~~~~l~  489 (731)
T Consensus       676 k~~~~~~~CP~C~~g-~~~  693 (761)
T PRK09137        676 KPKDTGVTCPKCKKG-ELV  693 (761)
T ss_pred             CCCCCCCCCCCCCCC-CEE
T ss_conf             766677619899998-777