HHsearch alignment for GI: 254780619 and conserved domain: PRK09165
>PRK09165 replicative DNA helicase; Provisional.
Probab=94.18 E-value=0.51 Score=26.91 Aligned_cols=132 Identities=21% Similarity=0.211 Sum_probs=76.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHH---------------HCCCCEEEEECCCHHHHHHHHHHHCCC-CCEEE-EEECCC
Q ss_conf 6199844753157999999999985---------------146847997152100134455543038-97689-962355
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVL---------------HLGKQVLILLPEISLTSAILERFQKRF-GVKPA-EWHSSL 281 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L---------------~~GkqvLiLvPEI~Lt~Q~~~rl~~rF-~~~v~-v~HS~l 281 (731)
T Consensus 206 dLiIIAARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs-~~ql~~Rlls~~s~V~~~~ir~g~l 284 (484)
T PRK09165 206 DLIILAGRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMS-AEQLATRILSEQSEISSSKIRRGKI 284 (484)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 379996079997789999999999987410222233211368984899947799-9999999999972686135544899
Q ss_pred CCHHHHHHHHHHH-CCCCEEEEECCHHH-----------HHHHCCCEEEEEEECCCCCCHHCCCC--C--CCHH--HHH-
Q ss_conf 7235667899997-19973999400121-----------10010001367740553210000244--3--2248--999-
Q gi|254780619|r 282 STSMREKIWRQVA-RGAISVIVGVRSAL-----------FLPFKKLGLIVIDEEHDISYKQEEGI--L--YNAR--DMS- 342 (731)
Q Consensus 282 s~~eR~~~w~~i~-~G~~~IVIGtRSAi-----------f~P~~nLglIIvDEEHd~sykq~~~p--r--y~aR--dvA- 342 (731)
T Consensus 285 ~~~e~~~i~~a~~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~gl~livID------YLqLi~~~~~~~~~~R~~ev~~ 358 (484)
T PRK09165 285 SEEDFEKLVDASQELQKLPLYIDDTPALSISALRARARRLKRQHGLDLLVID------YLQLIRGSSKRSQDNRVQEISE 358 (484)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE------CHHHCCCCCCCCCHHHHHHHHH
T ss_conf 9999999999999997198489779998799999999999986099889995------1763578888861219999999
Q ss_pred -----HHHHHHCCCCEECCC
Q ss_conf -----997511032100002
Q gi|254780619|r 343 -----IVRGKIESFPVVLVS 357 (731)
Q Consensus 343 -----~~Ra~~~~~~lilgS 357 (731)
T Consensus 359 Isr~LK~lAkel~ipVi~Ls 378 (484)
T PRK09165 359 ITQGLKALAKELNIPVIALS 378 (484)
T ss_pred HHHHHHHHHHHHCCCEEEEC
T ss_conf 99999999999699699974