HHsearch alignment for GI: 254780619 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=91.18  E-value=0.54  Score=26.71  Aligned_cols=130  Identities=15%  Similarity=0.172  Sum_probs=70.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             66883789999999875204896199844753157999999999985146847997152100134455543038976899
Q gi|254780619|r  197 PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAE  276 (731)
Q Consensus       197 ~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v  276 (731)
T Consensus        82 ~~l~~~~i~~La~~--~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~-----~~~L~~~L~~a~~~----  150 (258)
T PRK09183         82 TGAPQKQLQSLRSL--SFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-----AADLLLQLSTAQRQ----  150 (258)
T ss_pred             CCCCHHHHHHHHCC--CHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHHC----
T ss_conf             86238999988258--16655886799899998689999999999998799399978-----99999999999876----


Q ss_pred             EECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHH-HHCCCEEEEEEECCCCCCHHCCCCCCCHHHHH-HHHHHHCCCCEE
Q ss_conf             6235572356678999971997399940012110-01000136774055321000024432248999-997511032100
Q gi|254780619|r  277 WHSSLSTSMREKIWRQVARGAISVIVGVRSALFL-PFKKLGLIVIDEEHDISYKQEEGILYNARDMS-IVRGKIESFPVV  354 (731)
Q Consensus       277 ~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~-P~~nLglIIvDEEHd~sykq~~~pry~aRdvA-~~Ra~~~~~~li  354 (731)
T Consensus       151 -----------~~~~---------------~~l~r~l~~~dLLIiDd---lG~~~~~~--~~~~~lfeli~~Rye~~S~I  199 (258)
T PRK09183        151 -----------GRYK---------------TTLQRGVMAPRLLIIDE---IGYLPFSQ--EEANLFFQVIAKRYEKGAMI  199 (258)
T ss_pred             -----------CCHH---------------HHHHHHHCCCCEEEEHH---HHCCCCCH--HHHHHHHHHHHHHHCCCCEE
T ss_conf             -----------8599---------------99998743465144313---31546888--89999999999985767789


Q ss_pred             CCCCCCCHHHHHHHH
Q ss_conf             002454324677532
Q gi|254780619|r  355 LVSATPSIESRVNGI  369 (731)
Q Consensus       355 lgSATPSles~~~~~  369 (731)
T Consensus       200 iTSn~~-~~~W~~~f  213 (258)
T PRK09183        200 LTSNLP-FGQWDQTF  213 (258)
T ss_pred             EECCCC-HHHHHHHC
T ss_conf             988999-78985651