HHsearch alignment for GI: 254780619 and conserved domain: PRK10590

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=96.48  E-value=0.094  Score=32.51  Aligned_cols=123  Identities=21%  Similarity=0.226  Sum_probs=81.5

Q ss_pred             EECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             84475315799999999998514684799715210013445554303897689962355723566789999719973999
Q gi|254780619|r  223 ISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIV  302 (731)
Q Consensus       223 L~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVI  302 (731)
T Consensus       224 ~~~v~~~~k~~~L~~ll~~--~~~~~~iIF~~tk~~a~~l~~~L~~-~g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLV  300 (457)
T PRK10590        224 VHFVDKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNK-DGIRSAAIHGNKSQGARTRALADFKSGDIRVLV  300 (457)
T ss_pred             EEEECHHHHHHHHHHHHHH--CCCCCEEEEECHHHHHHHHHHHHHH-CCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             9995667899999999861--5866335884119999999999855-699823232478999999999999869982999


Q ss_pred             ECCHHH-HHHHCCCEEEEE-EECCC-CCCHHCCCCCCCHHHHHHHHHHHCCCCEECC
Q ss_conf             400121-100100013677-40553-2100002443224899999751103210000
Q gi|254780619|r  303 GVRSAL-FLPFKKLGLIVI-DEEHD-ISYKQEEGILYNARDMSIVRGKIESFPVVLV  356 (731)
Q Consensus       303 GtRSAi-f~P~~nLglIIv-DEEHd-~sykq~~~pry~aRdvA~~Ra~~~~~~lilg  356 (731)
T Consensus       301 aTDvaaRGiDi~~V~~VInyD~P~~~e~YvHRi-----GR---TGRaG~~G~ait~v  349 (457)
T PRK10590        301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRI-----GR---TGRAAATGEALSLV  349 (457)
T ss_pred             ECCCCCCCCCCCCCCEEEEECCCCCHHHEECCC-----CC---CCCCCCCEEEEEEE
T ss_conf             577011556635688799938999744500226-----70---60589953699986