HHsearch alignment for GI: 254780619 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=96.48 E-value=0.094 Score=32.51 Aligned_cols=123 Identities=21% Similarity=0.226 Sum_probs=81.5
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 84475315799999999998514684799715210013445554303897689962355723566789999719973999
Q gi|254780619|r 223 ISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIV 302 (731)
Q Consensus 223 L~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVI 302 (731)
T Consensus 224 ~~~v~~~~k~~~L~~ll~~--~~~~~~iIF~~tk~~a~~l~~~L~~-~g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLV 300 (457)
T PRK10590 224 VHFVDKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNK-DGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300 (457)
T ss_pred EEEECHHHHHHHHHHHHHH--CCCCCEEEEECHHHHHHHHHHHHHH-CCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 9995667899999999861--5866335884119999999999855-699823232478999999999999869982999
Q ss_pred ECCHHH-HHHHCCCEEEEE-EECCC-CCCHHCCCCCCCHHHHHHHHHHHCCCCEECC
Q ss_conf 400121-100100013677-40553-2100002443224899999751103210000
Q gi|254780619|r 303 GVRSAL-FLPFKKLGLIVI-DEEHD-ISYKQEEGILYNARDMSIVRGKIESFPVVLV 356 (731)
Q Consensus 303 GtRSAi-f~P~~nLglIIv-DEEHd-~sykq~~~pry~aRdvA~~Ra~~~~~~lilg 356 (731)
T Consensus 301 aTDvaaRGiDi~~V~~VInyD~P~~~e~YvHRi-----GR---TGRaG~~G~ait~v 349 (457)
T PRK10590 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRI-----GR---TGRAAATGEALSLV 349 (457)
T ss_pred ECCCCCCCCCCCCCCEEEEECCCCCHHHEECCC-----CC---CCCCCCCEEEEEEE
T ss_conf 577011556635688799938999744500226-----70---60589953699986