HHsearch alignment for GI: 254780619 and conserved domain: PRK10689
>PRK10689 transcription-repair coupling factor; Provisional.
Probab=97.17 E-value=0.0043 Score=42.73 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=50.6
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCH--HHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEE-HHHCCCCCCCCCCHHHHHHHH
Q ss_conf 00135428998888520485200--010232113586789999986212576579870-443023113452012330003
Q gi|254780619|r 488 MIACGFGIERIAEEVCEYFPLAR--ISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGT-QLVAKGHNFPRMSLVGVVDGD 564 (731)
Q Consensus 488 l~~~G~Gte~~~e~l~~~fp~~~--v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgT-q~i~kg~~fp~v~lv~il~aD 564 (731)
T Consensus 655 lvPTTiLA~QH~~tF~~Rf~~~pv~i~~LsRf--~s~ke~~~i~~~l~~G~idIvIGTH~ll~~dv~f~~LGLlIi-DEE 731 (1148)
T PRK10689 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMLSRF--RSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV-DEE 731 (1148)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCCEEEE-CCC
T ss_conf 83662237999999998764157337750388--889999999999866998776204888669865466643786-010
Q ss_pred H
Q ss_conf 4
Q gi|254780619|r 565 L 565 (731)
Q Consensus 565 ~ 565 (731)
T Consensus 732 q 732 (1148)
T PRK10689 732 H 732 (1148)
T ss_pred H
T ss_conf 2