HHsearch alignment for GI: 254780619 and conserved domain: PRK10689

>PRK10689 transcription-repair coupling factor; Provisional.
Probab=97.17  E-value=0.0043  Score=42.73  Aligned_cols=75  Identities=23%  Similarity=0.314  Sum_probs=50.6

Q ss_pred             ECCCCCCHHHHHHHHHHCCCCCH--HHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEE-HHHCCCCCCCCCCHHHHHHHH
Q ss_conf             00135428998888520485200--010232113586789999986212576579870-443023113452012330003
Q gi|254780619|r  488 MIACGFGIERIAEEVCEYFPLAR--ISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGT-QLVAKGHNFPRMSLVGVVDGD  564 (731)
Q Consensus       488 l~~~G~Gte~~~e~l~~~fp~~~--v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgT-q~i~kg~~fp~v~lv~il~aD  564 (731)
T Consensus       655 lvPTTiLA~QH~~tF~~Rf~~~pv~i~~LsRf--~s~ke~~~i~~~l~~G~idIvIGTH~ll~~dv~f~~LGLlIi-DEE  731 (1148)
T PRK10689        655 LVPTTLLAQQHYDNFRDRFANWPVRIEMLSRF--RSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV-DEE  731 (1148)
T ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCCEEEE-CCC
T ss_conf             83662237999999998764157337750388--889999999999866998776204888669865466643786-010


Q ss_pred             H
Q ss_conf             4
Q gi|254780619|r  565 L  565 (731)
Q Consensus       565 ~  565 (731)
T Consensus       732 q  732 (1148)
T PRK10689        732 H  732 (1148)
T ss_pred             H
T ss_conf             2