HHsearch alignment for GI: 254780619 and conserved domain: PRK11131

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=97.99  E-value=0.00086  Score=48.08  Aligned_cols=147  Identities=22%  Similarity=0.293  Sum_probs=83.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHH--CCCCEEEEECC------CHHHHHHHHHHHCC
Q ss_conf             68837899999998752048961998447531579999999999851--46847997152------10013445554303
Q gi|254780619|r  198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLH--LGKQVLILLPE------ISLTSAILERFQKR  269 (731)
Q Consensus       198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~--~GkqvLiLvPE------I~Lt~Q~~~rl~~r  269 (731)
T Consensus        74 Pi~~~r~~i~~~i~~-----nqVvii~GeTGsGKTT---QiPq~~le~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~  145 (1295)
T PRK11131         74 PVSQKKQDILEAIRD-----HQVVIVAGETGSGKTT---QLPKICLELGRGIKGLIGHTQPRRLAARTVANRIAEELETE  145 (1295)
T ss_pred             CCHHHHHHHHHHHHH-----CCEEEEECCCCCCHHH---HHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf             961899999999997-----9969997689998788---99999996279999989977965999999999999981999


Q ss_pred             CCCEEEE---EECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH-----HH-HCCCEEEEEEECCCCCCHHCCCCCCCHHH
Q ss_conf             8976899---623557235667899997199739994001211-----00-10001367740553210000244322489
Q gi|254780619|r  270 FGVKPAE---WHSSLSTSMREKIWRQVARGAISVIVGVRSALF-----LP-FKKLGLIVIDEEHDISYKQEEGILYNARD  340 (731)
Q Consensus       270 F~~~v~v---~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif-----~P-~~nLglIIvDEEHd~sykq~~~pry~aRd  340 (731)
T Consensus       146 lG~~VGY~VRf~~~~s-------------~~t~i~~~TdGiLL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~-Lk~  211 (1295)
T PRK11131        146 LGGCVGYKVRFNDQVS-------------DNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGY-LKE  211 (1295)
T ss_pred             CCCEEEEEECCCCCCC-------------CCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHH-HHH
T ss_conf             8998888945698879-------------99779997656999986209987887779986855688019999999-999


Q ss_pred             HHHHHHHHCCCCEECCCCCCCHHHHHHHH
Q ss_conf             99997511032100002454324677532
Q gi|254780619|r  341 MSIVRGKIESFPVVLVSATPSIESRVNGI  369 (731)
Q Consensus       341 vA~~Ra~~~~~~lilgSATPSles~~~~~  369 (731)
T Consensus       212 ll~---~R~dLKvIimSATid~e~fs~yF  237 (1295)
T PRK11131        212 LLP---RRPDLKVIITSATIDPERFSRHF  237 (1295)
T ss_pred             HHH---HCCCCEEEEECCCCCHHHHHHHC
T ss_conf             983---39998899955868979999657