HHsearch alignment for GI: 254780619 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=97.99 E-value=0.00086 Score=48.08 Aligned_cols=147 Identities=22% Similarity=0.293 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHH--CCCCEEEEECC------CHHHHHHHHHHHCC
Q ss_conf 68837899999998752048961998447531579999999999851--46847997152------10013445554303
Q gi|254780619|r 198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLH--LGKQVLILLPE------ISLTSAILERFQKR 269 (731)
Q Consensus 198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~--~GkqvLiLvPE------I~Lt~Q~~~rl~~r 269 (731)
T Consensus 74 Pi~~~r~~i~~~i~~-----nqVvii~GeTGsGKTT---QiPq~~le~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~ 145 (1295)
T PRK11131 74 PVSQKKQDILEAIRD-----HQVVIVAGETGSGKTT---QLPKICLELGRGIKGLIGHTQPRRLAARTVANRIAEELETE 145 (1295)
T ss_pred CCHHHHHHHHHHHHH-----CCEEEEECCCCCCHHH---HHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 961899999999997-----9969997689998788---99999996279999989977965999999999999981999
Q ss_pred CCCEEEE---EECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH-----HH-HCCCEEEEEEECCCCCCHHCCCCCCCHHH
Q ss_conf 8976899---623557235667899997199739994001211-----00-10001367740553210000244322489
Q gi|254780619|r 270 FGVKPAE---WHSSLSTSMREKIWRQVARGAISVIVGVRSALF-----LP-FKKLGLIVIDEEHDISYKQEEGILYNARD 340 (731)
Q Consensus 270 F~~~v~v---~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif-----~P-~~nLglIIvDEEHd~sykq~~~pry~aRd 340 (731)
T Consensus 146 lG~~VGY~VRf~~~~s-------------~~t~i~~~TdGiLL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~-Lk~ 211 (1295)
T PRK11131 146 LGGCVGYKVRFNDQVS-------------DNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGY-LKE 211 (1295)
T ss_pred CCCEEEEEECCCCCCC-------------CCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHH-HHH
T ss_conf 8998888945698879-------------99779997656999986209987887779986855688019999999-999
Q ss_pred HHHHHHHHCCCCEECCCCCCCHHHHHHHH
Q ss_conf 99997511032100002454324677532
Q gi|254780619|r 341 MSIVRGKIESFPVVLVSATPSIESRVNGI 369 (731)
Q Consensus 341 vA~~Ra~~~~~~lilgSATPSles~~~~~ 369 (731)
T Consensus 212 ll~---~R~dLKvIimSATid~e~fs~yF 237 (1295)
T PRK11131 212 LLP---RRPDLKVIITSATIDPERFSRHF 237 (1295)
T ss_pred HHH---HCCCCEEEEECCCCCHHHHHHHC
T ss_conf 983---39998899955868979999657