HHsearch alignment for GI: 254780619 and conserved domain: PRK11192

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=99.82  E-value=8.7e-18  Score=155.11  Aligned_cols=349  Identities=16%  Similarity=0.221  Sum_probs=204.4

Q ss_pred             HHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf             70999899975245572234455410235665434466668837899999998752048961998447531579999999
Q gi|254780619|r  159 ASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEI  238 (731)
Q Consensus       159 ~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~l  238 (731)
T Consensus         7 ~l~L~~~l~~~L~~~g~~---------------------~pT~IQ~~aIp~il~g-----~dvl~~A~TGSGKTlaylLP   60 (417)
T PRK11192          7 ELDLDPSLLEALQDKGYT---------------------RPTAIQAEAIPPALDG-----RDVLGSAPTGTGKTAAFLLP   60 (417)
T ss_pred             HCCCCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHHH
T ss_conf             779899999999977999---------------------9999999999999779-----98899899986799999999


Q ss_pred             HH-HHHH------CCCCEEEEECCCHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             99-9851------4684799715210013445554303---897689962355723566789999719973999400121
Q gi|254780619|r  239 VA-AVLH------LGKQVLILLPEISLTSAILERFQKR---FGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSAL  308 (731)
Q Consensus       239 i~-~~L~------~GkqvLiLvPEI~Lt~Q~~~rl~~r---F~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAi  308 (731)
T Consensus        61 il~~l~~~~~~~~~~~~~LIl~PTrELa~Qi~~~~~~l~~~~~i~~~~i~Gg~~~~~q~~----~l~~~~dIlV~TPgRL  136 (417)
T PRK11192         61 ALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAE----VFSENQDIVVATPGRL  136 (417)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHH----HHHCCCCEEEECCCHH
T ss_conf             999987521036899649999471999999999999864005730599856878799999----9836999899786077


Q ss_pred             H-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCC---HHHHHHHHHHHHHHHCC
Q ss_conf             1-------0010001367740553210000244322489999975110321000024543---24677532123444124
Q gi|254780619|r  309 F-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPS---IESRVNGISRRYHSVHL  378 (731)
Q Consensus       309 f-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPS---les~~~~~~g~~~~~~l  378 (731)
T Consensus       137 ~~~l~~~~~~l~~l~~lVlDEAD~ml---d~gF~~~i~~I~~~--~~~~~Q~llfSATl~~~~v~~l~~~------~l--  203 (417)
T PRK11192        137 LQYIKEENFDCRAVETLILDEADRML---DMGFAQDVEHIAAE--TRWRKQTLLFSATLEGDGVQDFAER------LL--  203 (417)
T ss_pred             HHHHHHCCCCCCCCCEEEEECCCCCC---CCCCHHHHHHHHHH--CCCCCEEEEEEEECCHHHHHHHHHH------HC--
T ss_conf             77886367010457489996755211---13547899999864--7677238999732684789999998------36--


Q ss_pred             CCCCCCCCCCC-CEECCCCCCCCCCCC---CCC--HHHHHHHHHHHCC--CCEEEEEECCCCEEHHCCCCCCCCCCCCCC
Q ss_conf             32236765433-211022223322245---479--8999999886226--551799742220000002356543431014
Q gi|254780619|r  379 STRYRNSALPH-LQVIDMRGQTIAQGK---SLS--PEMIDGIRHTLAR--NEQTLLFLNRRGYAPLTLCQVCGNRLKCLH  450 (731)
Q Consensus       379 ~~R~~~~~~P~-i~ivDm~~~~~~~~~---~lS--~~l~~~i~~~l~~--g~qvll~lnRrGya~~~~C~~Cg~~~~C~~  450 (731)
T Consensus       204 ~~-------p~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ll~~~~~~k~iIF~~t~-------------------  257 (417)
T PRK11192        204 ND-------PVEVDAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQEEVTRSIVFVRTR-------------------  257 (417)
T ss_pred             CC-------CEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCH-------------------
T ss_conf             79-------8899964676666743699999376899999999998534766521531124-------------------


Q ss_pred             CCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             65201211357832000021024465556667874110013542899888852048520001023211358678999998
Q gi|254780619|r  451 CSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLS  530 (731)
Q Consensus       451 C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~  530 (731)
T Consensus       258 ------------------------------------------~~~~~l~~~L~~~--g~~~~~lhg~l~--q~~R~~~l~  291 (417)
T PRK11192        258 ------------------------------------------ERVHELAGWLRKA--GINCCYLEGEMV--QKKRNEAIK  291 (417)
T ss_pred             ------------------------------------------HHHHHHHHHHHCC--CCCEEEECCCCC--HHHHHHHHH
T ss_conf             ------------------------------------------6676898865314--883575400179--999999999


Q ss_pred             HHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHH
Q ss_conf             62125765798704430231134520123300034431024557899999875431102566788689999329864888
Q gi|254780619|r  531 AIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPTHPVM  610 (731)
Q Consensus       531 ~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~iQt~~p~~~~~  610 (731)
T Consensus       292 ~F~~g~~~vLVaTDvaaRGiDi~~V~~VInyd~------P--~----~~~~YvHRiGRTGR~G~~G~ait~v~~~d~~~~  359 (417)
T PRK11192        292 RLTDGRVNVLVATDVAARGIDIDDISHVINFDM------P--R----SADTYLHRIGRTGRAGKKGTAISLVEAHDHLLL  359 (417)
T ss_pred             HHHCCCCCEEEECCHHHCCCCCCCCCEEEEECC------C--C----CHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHH
T ss_conf             997699989998124346777046988999799------9--9----888923306772348995489998748999999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             99995897999999999999818888011
Q gi|254780619|r  611 QALVSGDADSFYESEIRARESVNLPPFGR  639 (731)
Q Consensus       611 ~~~~~~d~~~f~~~el~~R~~~~~PPf~~  639 (731)
T Consensus       360 ~-----~ie~~~~~~~~~~~~~~~~~~~~  383 (417)
T PRK11192        360 G-----KIERYIEEPLKRRVIDELRPKTK  383 (417)
T ss_pred             H-----HHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             9-----99999779887312688688988