HHsearch alignment for GI: 254780619 and conserved domain: PRK11192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=99.82 E-value=8.7e-18 Score=155.11 Aligned_cols=349 Identities=16% Similarity=0.221 Sum_probs=204.4
Q ss_pred HHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 70999899975245572234455410235665434466668837899999998752048961998447531579999999
Q gi|254780619|r 159 ASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEI 238 (731)
Q Consensus 159 ~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~l 238 (731)
T Consensus 7 ~l~L~~~l~~~L~~~g~~---------------------~pT~IQ~~aIp~il~g-----~dvl~~A~TGSGKTlaylLP 60 (417)
T PRK11192 7 ELDLDPSLLEALQDKGYT---------------------RPTAIQAEAIPPALDG-----RDVLGSAPTGTGKTAAFLLP 60 (417)
T ss_pred HCCCCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHHH
T ss_conf 779899999999977999---------------------9999999999999779-----98899899986799999999
Q ss_pred HH-HHHH------CCCCEEEEECCCHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 99-9851------4684799715210013445554303---897689962355723566789999719973999400121
Q gi|254780619|r 239 VA-AVLH------LGKQVLILLPEISLTSAILERFQKR---FGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSAL 308 (731)
Q Consensus 239 i~-~~L~------~GkqvLiLvPEI~Lt~Q~~~rl~~r---F~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAi 308 (731)
T Consensus 61 il~~l~~~~~~~~~~~~~LIl~PTrELa~Qi~~~~~~l~~~~~i~~~~i~Gg~~~~~q~~----~l~~~~dIlV~TPgRL 136 (417)
T PRK11192 61 ALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAE----VFSENQDIVVATPGRL 136 (417)
T ss_pred HHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHH----HHHCCCCEEEECCCHH
T ss_conf 999987521036899649999471999999999999864005730599856878799999----9836999899786077
Q ss_pred H-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCC---HHHHHHHHHHHHHHHCC
Q ss_conf 1-------0010001367740553210000244322489999975110321000024543---24677532123444124
Q gi|254780619|r 309 F-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPS---IESRVNGISRRYHSVHL 378 (731)
Q Consensus 309 f-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPS---les~~~~~~g~~~~~~l 378 (731)
T Consensus 137 ~~~l~~~~~~l~~l~~lVlDEAD~ml---d~gF~~~i~~I~~~--~~~~~Q~llfSATl~~~~v~~l~~~------~l-- 203 (417)
T PRK11192 137 LQYIKEENFDCRAVETLILDEADRML---DMGFAQDVEHIAAE--TRWRKQTLLFSATLEGDGVQDFAER------LL-- 203 (417)
T ss_pred HHHHHHCCCCCCCCCEEEEECCCCCC---CCCCHHHHHHHHHH--CCCCCEEEEEEEECCHHHHHHHHHH------HC--
T ss_conf 77886367010457489996755211---13547899999864--7677238999732684789999998------36--
Q ss_pred CCCCCCCCCCC-CEECCCCCCCCCCCC---CCC--HHHHHHHHHHHCC--CCEEEEEECCCCEEHHCCCCCCCCCCCCCC
Q ss_conf 32236765433-211022223322245---479--8999999886226--551799742220000002356543431014
Q gi|254780619|r 379 STRYRNSALPH-LQVIDMRGQTIAQGK---SLS--PEMIDGIRHTLAR--NEQTLLFLNRRGYAPLTLCQVCGNRLKCLH 450 (731)
Q Consensus 379 ~~R~~~~~~P~-i~ivDm~~~~~~~~~---~lS--~~l~~~i~~~l~~--g~qvll~lnRrGya~~~~C~~Cg~~~~C~~ 450 (731)
T Consensus 204 ~~-------p~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ll~~~~~~k~iIF~~t~------------------- 257 (417)
T PRK11192 204 ND-------PVEVDAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQEEVTRSIVFVRTR------------------- 257 (417)
T ss_pred CC-------CEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCH-------------------
T ss_conf 79-------8899964676666743699999376899999999998534766521531124-------------------
Q ss_pred CCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 65201211357832000021024465556667874110013542899888852048520001023211358678999998
Q gi|254780619|r 451 CSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLS 530 (731)
Q Consensus 451 C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~ 530 (731)
T Consensus 258 ------------------------------------------~~~~~l~~~L~~~--g~~~~~lhg~l~--q~~R~~~l~ 291 (417)
T PRK11192 258 ------------------------------------------ERVHELAGWLRKA--GINCCYLEGEMV--QKKRNEAIK 291 (417)
T ss_pred ------------------------------------------HHHHHHHHHHHCC--CCCEEEECCCCC--HHHHHHHHH
T ss_conf ------------------------------------------6676898865314--883575400179--999999999
Q ss_pred HHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHH
Q ss_conf 62125765798704430231134520123300034431024557899999875431102566788689999329864888
Q gi|254780619|r 531 AIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPTHPVM 610 (731)
Q Consensus 531 ~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~iQt~~p~~~~~ 610 (731)
T Consensus 292 ~F~~g~~~vLVaTDvaaRGiDi~~V~~VInyd~------P--~----~~~~YvHRiGRTGR~G~~G~ait~v~~~d~~~~ 359 (417)
T PRK11192 292 RLTDGRVNVLVATDVAARGIDIDDISHVINFDM------P--R----SADTYLHRIGRTGRAGKKGTAISLVEAHDHLLL 359 (417)
T ss_pred HHHCCCCCEEEECCHHHCCCCCCCCCEEEEECC------C--C----CHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHH
T ss_conf 997699989998124346777046988999799------9--9----888923306772348995489998748999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99995897999999999999818888011
Q gi|254780619|r 611 QALVSGDADSFYESEIRARESVNLPPFGR 639 (731)
Q Consensus 611 ~~~~~~d~~~f~~~el~~R~~~~~PPf~~ 639 (731)
T Consensus 360 ~-----~ie~~~~~~~~~~~~~~~~~~~~ 383 (417)
T PRK11192 360 G-----KIERYIEEPLKRRVIDELRPKTK 383 (417)
T ss_pred H-----HHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9-----99999779887312688688988