HHsearch alignment for GI: 254780619 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=99.14 E-value=1.1e-09 Score=93.17 Aligned_cols=170 Identities=21% Similarity=0.228 Sum_probs=113.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHCCCCCEE
Q ss_conf 66883789999999875204896199844753157999999999985146--8479971521001344555430389768
Q gi|254780619|r 197 PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLG--KQVLILLPEISLTSAILERFQKRFGVKP 274 (731)
Q Consensus 197 ~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~G--kqvLiLvPEI~Lt~Q~~~rl~~rF~~~v 274 (731)
T Consensus 415 i~lR~YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~~~~~~- 493 (1126)
T PRK11448 415 LGLRYYQEDAIQAVEKALANGQREILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKDTKIEG- 493 (1126)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC-
T ss_conf 7786889999999999998098546887248885898999999999965876725798565899999999875434545-
Q ss_pred EEEECCCCCHHHHHHH---HHHHCCCCEEEEECCHHHH-----------HHHCCCEEEEEEECCCCCCHHCCCCC---CC
Q ss_conf 9962355723566789---9997199739994001211-----------00100013677405532100002443---22
Q gi|254780619|r 275 AEWHSSLSTSMREKIW---RQVARGAISVIVGVRSALF-----------LPFKKLGLIVIDEEHDISYKQEEGIL---YN 337 (731)
Q Consensus 275 ~v~HS~ls~~eR~~~w---~~i~~G~~~IVIGtRSAif-----------~P~~nLglIIvDEEHd~sykq~~~pr---y~ 337 (731)
T Consensus 494 -----~~~~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRg-y~ld~em~e~e~~ 567 (1126)
T PRK11448 494 -----NQTFASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRG-YTLDKEMTEGELQ 567 (1126)
T ss_pred -----CCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCHHC
T ss_conf -----6664002200102567878777199973078998752357677999985137989778788-7433231100010
Q ss_pred HHH----HHHHHH--HHCCCCEECCCCCCCHHHHHHHHHHHH
Q ss_conf 489----999975--110321000024543246775321234
Q gi|254780619|r 338 ARD----MSIVRG--KIESFPVVLVSATPSIESRVNGISRRY 373 (731)
Q Consensus 338 aRd----vA~~Ra--~~~~~~lilgSATPSles~~~~~~g~~ 373 (731)
T Consensus 568 ~rd~~s~~skyr~IldYFDA~~iGLTATP~~~T~~~Fg~P~~ 609 (1126)
T PRK11448 568 FRDQLDYVSKYRRVLDYFDAVKIGLTATPALHTTEIFGEPVY 609 (1126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCE
T ss_conf 232024777899998762155404767999555677099730