HHsearch alignment for GI: 254780619 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=96.29 E-value=0.12 Score=31.75 Aligned_cols=125 Identities=20% Similarity=0.287 Sum_probs=84.3
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 44753157999999999985146847997152100134455543038976899623557235667899997199739994
Q gi|254780619|r 224 SGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVG 303 (731)
Q Consensus 224 ~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIG 303 (731)
T Consensus 225 ~~v~~~~K~~aL~~~L~~--~~~~~~IIF~~Tk~~~~~l~~~L~~-~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVa 301 (629)
T PRK11634 225 WTVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALER-NGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301 (629)
T ss_pred EEECCHHHHHHHHHHHHH--CCCCEEEEEEECHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 996524579999999861--5888489998227889999999997-6996576568999999999999997599988987
Q ss_pred CCHHH-HHHHCCCEEEEE-EECCC-CCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCC
Q ss_conf 00121-100100013677-40553-210000244322489999975110321000024543
Q gi|254780619|r 304 VRSAL-FLPFKKLGLIVI-DEEHD-ISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPS 361 (731)
Q Consensus 304 tRSAi-f~P~~nLglIIv-DEEHd-~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPS 361 (731)
T Consensus 302 TDvaARGLDi~~V~~VINyDlP~d~e~YVHRiG-----R---TGRaGr~G~Aitfv--~~~ 352 (629)
T PRK11634 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIG-----R---TGRAGRAGRALLFV--ENR 352 (629)
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCHHHCCCCCC-----C---CCCCCCCEEEEEEE--CHH
T ss_conf 862105577256888999689897434010258-----3---31689964699988--889