HHsearch alignment for GI: 254780619 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=98.96 E-value=1.1e-07 Score=77.97 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=52.1
Q ss_pred HHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999998514-684799715210013445554303897--689962355723566789999719973999400
Q gi|254780619|r 236 LEIVAAVLHL-GKQVLILLPEISLTSAILERFQKRFGV--KPAEWHSSLSTSMREKIWRQVARGAISVIVGVR 305 (731)
Q Consensus 236 l~li~~~L~~-GkqvLiLvPEI~Lt~Q~~~rl~~rF~~--~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtR 305 (731)
T Consensus 201 ~~~i~~~~~~~~G~iLvFLPG~~EI~~~~~~L~~~~~~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTn 273 (812)
T PRK11664 201 AVATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVGSDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATN 273 (812)
T ss_pred HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 9999999735899889976998999999999863355780899644789988987760679999537999502