HHsearch alignment for GI: 254780619 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=92.64 E-value=0.42 Score=27.50 Aligned_cols=300 Identities=18% Similarity=0.267 Sum_probs=146.5
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHH-HHHHHHHHHHHCCCCEEEEECC----CHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 999987520489619984475315799-9999999985146847997152----10013445554303897689962355
Q gi|254780619|r 207 VEQVVPLCTKGFAVSLISGVTGSGKTE-VYLEIVAAVLHLGKQVLILLPE----ISLTSAILERFQKRFGVKPAEWHSSL 281 (731)
Q Consensus 207 ~~~i~~~~~~~f~~~LL~GvTGSGKTE-VYl~li~~~L~~GkqvLiLvPE----I~Lt~Q~~~rl~~rF~~~v~v~HS~l 281 (731)
T Consensus 10 ~~~i~~~l~~-~~~~vl~a~tGsGKtTqvP~~ll~~~~~~g-~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VG-Y~v-- 84 (812)
T PRK11664 10 LPELLTALKT-APQVLLKAPTGAGKSTWLPLQLLQQGGING-KIIMLEPRRLAARNVAQRLAEQLGEKPGETVG-YRM-- 84 (812)
T ss_pred HHHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHCCCCCC-CEEEECCHHHHHHHHHHHHHHHHCCCCCCEEE-EEE--
T ss_conf 9999999997-997999908999989999999996468899-38993883999999999999972999998675-782--
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCHHHHH------H-HCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 72356678999971997399940012110------0-1000136774055321000024432248999997511032100
Q gi|254780619|r 282 STSMREKIWRQVARGAISVIVGVRSALFL------P-FKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVV 354 (731)
Q Consensus 282 s~~eR~~~w~~i~~G~~~IVIGtRSAif~------P-~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~li 354 (731)
T Consensus 85 ----R~e~---~~s~~Tri~~~T~-GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~-l~~~~--~~~~r~dLklv 153 (812)
T PRK11664 85 ----RAES---KVGPNTRLEVVTE-GILTRMIQRDPELSGVGLVILDEFHERSLQADLALA-LLLDV--QQGLRDDLKLL 153 (812)
T ss_pred ----CCCC---CCCCCCEEEEECH-HHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHH-HHHHH--HHHHCCCCEEE
T ss_conf ----5677---8899857999755-899999724977677888999575468751899999-99999--98618982899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CEEEEEECCCCE
Q ss_conf 0024543246775321234441243223676543321102222332224547989999998862265-517997422200
Q gi|254780619|r 355 LVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARN-EQTLLFLNRRGY 433 (731)
Q Consensus 355 lgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~ivDm~~~~~~~~~~lS~~l~~~i~~~l~~g-~qvll~lnRrGy 433 (731)
T Consensus 154 vMSATld~~~~~~~~~~-~~~i~~----~gr~fp-V~---~~y~~~~~~~~~~~~~~~~i~~~~~~~~G~iLvFLPG~~E 224 (812)
T PRK11664 154 IMSATLDNDRLQQLLPD-APYIES----EGRSFP-VE---RRYQPLPAHQRFDEAVAVATAELLRQESGSLLLFLPGVGE 224 (812)
T ss_pred EECCCCCHHHHHHHCCC-CCEEEE----CCCCCC-EE---EEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHH
T ss_conf 98478884889975899-988987----874331-15---7854688520699999999999973589988997699899
Q ss_pred EHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCC-CCHHH
Q ss_conf 00002356543431014652012113578320000210244655566678741100135428998888520485-20001
Q gi|254780619|r 434 APLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFP-LARIS 512 (731)
Q Consensus 434 a~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp-~~~v~ 512 (731)
T Consensus 225 I-------------------------------------------------------------~~~~~~L~~~~~~~~~i~ 243 (812)
T PRK11664 225 I-------------------------------------------------------------QRVQEQLASRVGSDVLLC 243 (812)
T ss_pred H-------------------------------------------------------------HHHHHHHHHHCCCCEEEE
T ss_conf 9-------------------------------------------------------------999999863355780899
Q ss_pred HCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHH---------HHH
Q ss_conf 02321135867899999862125765798704430231134520123300034431-02455789999---------987
Q gi|254780619|r 513 ILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLT-NADLRSSERTF---------QLL 582 (731)
Q Consensus 513 ~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~-~pd~ra~E~~~---------qll 582 (731)
T Consensus 244 pL~g~l--~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~VI----DsG~~r~~~~d~~~g~~~L~~~~iSkasa 317 (812)
T PRK11664 244 PLYGAL--SLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLVV----DSGLERVARFDPKTGLTRLETQRISQASM 317 (812)
T ss_pred ECCCCC--CHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEEE----ECHHHHHHEECCCCCCCEEEEEECCHHHH
T ss_conf 644789--988987760679999537999502000202017814897----40223443234357975676770454435
Q ss_pred HHHHHCCCCCCCCCEEE
Q ss_conf 54311025667886899
Q gi|254780619|r 583 SQVTGRAGRFGLKSLGL 599 (731)
Q Consensus 583 ~qv~gRagr~~~~g~v~ 599 (731)
T Consensus 318 ~QRaGRAGR~-~pG~cy 333 (812)
T PRK11664 318 TQRAGRAGRL-EPGICL 333 (812)
T ss_pred HCCCCCCCCC-CCCEEE
T ss_conf 3136767888-997078