HHsearch alignment for GI: 254780619 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=99.78 E-value=2.6e-16 Score=143.88 Aligned_cols=378 Identities=17% Similarity=0.220 Sum_probs=210.7
Q ss_pred HHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 70999899975245572234455410235665434466668837899999998752048961998447531579999999
Q gi|254780619|r 159 ASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEI 238 (731)
Q Consensus 159 ~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~l 238 (731)
T Consensus 8 ~l~L~~~ll~aL~~~G~~---------------------~pTpIQ~~aIP~il~G-----~Dvi~~A~TGSGKTlAfllP 61 (459)
T PRK11776 8 TLPLPPALLANLDELGYT---------------------EMTPIQAQSLPAILAG-----KDVIAQAKTGSGKTAAFGLG 61 (459)
T ss_pred HCCCCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHHH
T ss_conf 489799999999977999---------------------9998999999999779-----98899889985899999999
Q ss_pred HHHHHHC---CCCEEEEECCCHHHHHHHHHHHCC---C-CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH--
Q ss_conf 9998514---684799715210013445554303---8-976899623557235667899997199739994001211--
Q gi|254780619|r 239 VAAVLHL---GKQVLILLPEISLTSAILERFQKR---F-GVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF-- 309 (731)
Q Consensus 239 i~~~L~~---GkqvLiLvPEI~Lt~Q~~~rl~~r---F-~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif-- 309 (731)
T Consensus 62 il~~l~~~~~~~qaLIL~PTRELa~QV~~~~~~l~~~~~~ikv~~l~GG~~~~~q~---~~L~~-~~~IvV~TPGRl~d~ 137 (459)
T PRK11776 62 LLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQI---GSLEH-GAHIIVGTPGRILDH 137 (459)
T ss_pred HHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHHHC-CCCEEEECCHHHHHH
T ss_conf 99841136789859999675999999999999998505882599998993279999---99746-999999895899988
Q ss_pred -----HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHH-HHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf -----00100013677405532100002443224899999-751103210000245432467753212344412432236
Q gi|254780619|r 310 -----LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIV-RGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYR 383 (731)
Q Consensus 310 -----~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~-Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~~ 383 (731)
T Consensus 138 l~~~~l~l~~v~~lVlDEAD~m-L--d~gF~---~~i~~Il~~~p~~rQ~~lfSAT~p~~i~~l~~~--~--l~~p~--- 204 (459)
T PRK11776 138 LRKGTLDLDALNTLVLDEADRM-L--DMGFQ---DAIDAIIRQAPARRQTLLFSATYPEGIAAISAR--F--QRDPV--- 204 (459)
T ss_pred HHCCCCCCCCEEEEEEECCHHH-H--CCCCH---HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH--H--CCCCE---
T ss_conf 7516632231038997062454-3--27866---889999986881302688845689899999999--7--78989---
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 76543321102222332224547989999998862265517997422200000023565434310146520121135783
Q gi|254780619|r 384 NSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKK 463 (731)
Q Consensus 384 ~~~~P~i~ivDm~~~~~~~~~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~ 463 (731)
T Consensus 205 -----~i~v-~--~~~--~~---~---------~I---~q~~~~v~~~~----------------------------K~~ 231 (459)
T PRK11776 205 -----EVKV-E--STH--DD---S---------TI---EQRFYEVDPDE----------------------------RLP 231 (459)
T ss_pred -----EEEE-C--CCC--CC---C---------CC---EEEEEEECHHH----------------------------HHH
T ss_conf -----9996-7--877--79---8---------63---79999977187----------------------------899
Q ss_pred CEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 20000210244655566678741100135428998888520485200010232113586789999986212576579870
Q gi|254780619|r 464 LYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGT 543 (731)
Q Consensus 464 l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgT 543 (731)
T Consensus 232 ~L~~ll~~~~~-~~~IIFcntk-------~~v~~l~~~L~~~--g~~~~~lHg~m~--q~~R~~~l~~F~~g~~~iLVaT 299 (459)
T PRK11776 232 ALQRLLLHYRP-ESCVVFCNTK-------KECQEVADALNAQ--GFSALALHGDLE--QRDRDQVLVRFANRSCSVLVAT 299 (459)
T ss_pred HHHHHHHHCCC-CCEEEEECCH-------HHHHHHHHHHHHC--CCCEEEEECCCC--HHHHHHHHHHHHCCCCCEEEEH
T ss_conf 99999973687-6603761748-------9999999999867--996899879999--9999999999977999799881
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC-CHHHHHHHHCCHHHHH
Q ss_conf 443023113452012330003443102455789999987543110256678868999932986-4888999958979999
Q gi|254780619|r 544 QLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPT-HPVMQALVSGDADSFY 622 (731)
Q Consensus 544 q~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~iQt~~p~-~~~~~~~~~~d~~~f~ 622 (731)
T Consensus 300 DvaaRGIDi~~V~~VInyDlP~------------~~e~YvHRiGRTGRaG~~G~ait~-vt~~e~~~l~~i-----e~~~ 361 (459)
T PRK11776 300 DVAARGLDIKSLEAVINYELAR------------DPEVHVHRIGRTGRAGSKGLALSL-VAPEEMQRAAAI-----EDYL 361 (459)
T ss_pred HHHHCCCCCCCCCEEEEECCCC------------CHHHHHHCCCHHHCCCCCEEEEEE-ECHHHHHHHHHH-----HHHH
T ss_conf 0434767713598899978989------------745520205251378996579999-868999999999-----9997
Q ss_pred HHHHHH------HHHCCCCCCHHEEEEEEECCCHHHH--HHHHHHHHH
Q ss_conf 999999------9981888801189998845998999--999999998
Q gi|254780619|r 623 ESEIRA------RESVNLPPFGRLAAVIISGTKYQEV--ENYAYNLKE 662 (731)
Q Consensus 623 ~~el~~------R~~~~~PPf~~~~~i~~~~~~~~~~--~~~~~~~~~ 662 (731)
T Consensus 362 ~~~i~~~~~p~~~~~~~~~~~~~~~~l~i~~G~k~k~~~~divg~~~~ 409 (459)
T PRK11776 362 GRKLNWEPLPSLSPLSGVPLLPPMVTLCIDGGKKDKLRPGDILGALTG 409 (459)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCC
T ss_conf 899864169996755678889985999993753148777888998617