HHsearch alignment for GI: 254780619 and conserved domain: PRK11776

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=99.78  E-value=2.6e-16  Score=143.88  Aligned_cols=378  Identities=17%  Similarity=0.220  Sum_probs=210.7

Q ss_pred             HHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf             70999899975245572234455410235665434466668837899999998752048961998447531579999999
Q gi|254780619|r  159 ASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEI  238 (731)
Q Consensus       159 ~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~l  238 (731)
T Consensus         8 ~l~L~~~ll~aL~~~G~~---------------------~pTpIQ~~aIP~il~G-----~Dvi~~A~TGSGKTlAfllP   61 (459)
T PRK11776          8 TLPLPPALLANLDELGYT---------------------EMTPIQAQSLPAILAG-----KDVIAQAKTGSGKTAAFGLG   61 (459)
T ss_pred             HCCCCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHHH
T ss_conf             489799999999977999---------------------9998999999999779-----98899889985899999999


Q ss_pred             HHHHHHC---CCCEEEEECCCHHHHHHHHHHHCC---C-CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH--
Q ss_conf             9998514---684799715210013445554303---8-976899623557235667899997199739994001211--
Q gi|254780619|r  239 VAAVLHL---GKQVLILLPEISLTSAILERFQKR---F-GVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF--  309 (731)
Q Consensus       239 i~~~L~~---GkqvLiLvPEI~Lt~Q~~~rl~~r---F-~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif--  309 (731)
T Consensus        62 il~~l~~~~~~~qaLIL~PTRELa~QV~~~~~~l~~~~~~ikv~~l~GG~~~~~q~---~~L~~-~~~IvV~TPGRl~d~  137 (459)
T PRK11776         62 LLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQI---GSLEH-GAHIIVGTPGRILDH  137 (459)
T ss_pred             HHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHHHC-CCCEEEECCHHHHHH
T ss_conf             99841136789859999675999999999999998505882599998993279999---99746-999999895899988


Q ss_pred             -----HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHH-HHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             -----00100013677405532100002443224899999-751103210000245432467753212344412432236
Q gi|254780619|r  310 -----LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIV-RGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYR  383 (731)
Q Consensus       310 -----~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~-Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~~  383 (731)
T Consensus       138 l~~~~l~l~~v~~lVlDEAD~m-L--d~gF~---~~i~~Il~~~p~~rQ~~lfSAT~p~~i~~l~~~--~--l~~p~---  204 (459)
T PRK11776        138 LRKGTLDLDALNTLVLDEADRM-L--DMGFQ---DAIDAIIRQAPARRQTLLFSATYPEGIAAISAR--F--QRDPV---  204 (459)
T ss_pred             HHCCCCCCCCEEEEEEECCHHH-H--CCCCH---HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH--H--CCCCE---
T ss_conf             7516632231038997062454-3--27866---889999986881302688845689899999999--7--78989---


Q ss_pred             CCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             76543321102222332224547989999998862265517997422200000023565434310146520121135783
Q gi|254780619|r  384 NSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKK  463 (731)
Q Consensus       384 ~~~~P~i~ivDm~~~~~~~~~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~  463 (731)
T Consensus       205 -----~i~v-~--~~~--~~---~---------~I---~q~~~~v~~~~----------------------------K~~  231 (459)
T PRK11776        205 -----EVKV-E--STH--DD---S---------TI---EQRFYEVDPDE----------------------------RLP  231 (459)
T ss_pred             -----EEEE-C--CCC--CC---C---------CC---EEEEEEECHHH----------------------------HHH
T ss_conf             -----9996-7--877--79---8---------63---79999977187----------------------------899


Q ss_pred             CEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             20000210244655566678741100135428998888520485200010232113586789999986212576579870
Q gi|254780619|r  464 LYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGT  543 (731)
Q Consensus       464 l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgT  543 (731)
T Consensus       232 ~L~~ll~~~~~-~~~IIFcntk-------~~v~~l~~~L~~~--g~~~~~lHg~m~--q~~R~~~l~~F~~g~~~iLVaT  299 (459)
T PRK11776        232 ALQRLLLHYRP-ESCVVFCNTK-------KECQEVADALNAQ--GFSALALHGDLE--QRDRDQVLVRFANRSCSVLVAT  299 (459)
T ss_pred             HHHHHHHHCCC-CCEEEEECCH-------HHHHHHHHHHHHC--CCCEEEEECCCC--HHHHHHHHHHHHCCCCCEEEEH
T ss_conf             99999973687-6603761748-------9999999999867--996899879999--9999999999977999799881


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC-CHHHHHHHHCCHHHHH
Q ss_conf             443023113452012330003443102455789999987543110256678868999932986-4888999958979999
Q gi|254780619|r  544 QLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPT-HPVMQALVSGDADSFY  622 (731)
Q Consensus       544 q~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~iQt~~p~-~~~~~~~~~~d~~~f~  622 (731)
T Consensus       300 DvaaRGIDi~~V~~VInyDlP~------------~~e~YvHRiGRTGRaG~~G~ait~-vt~~e~~~l~~i-----e~~~  361 (459)
T PRK11776        300 DVAARGLDIKSLEAVINYELAR------------DPEVHVHRIGRTGRAGSKGLALSL-VAPEEMQRAAAI-----EDYL  361 (459)
T ss_pred             HHHHCCCCCCCCCEEEEECCCC------------CHHHHHHCCCHHHCCCCCEEEEEE-ECHHHHHHHHHH-----HHHH
T ss_conf             0434767713598899978989------------745520205251378996579999-868999999999-----9997


Q ss_pred             HHHHHH------HHHCCCCCCHHEEEEEEECCCHHHH--HHHHHHHHH
Q ss_conf             999999------9981888801189998845998999--999999998
Q gi|254780619|r  623 ESEIRA------RESVNLPPFGRLAAVIISGTKYQEV--ENYAYNLKE  662 (731)
Q Consensus       623 ~~el~~------R~~~~~PPf~~~~~i~~~~~~~~~~--~~~~~~~~~  662 (731)
T Consensus       362 ~~~i~~~~~p~~~~~~~~~~~~~~~~l~i~~G~k~k~~~~divg~~~~  409 (459)
T PRK11776        362 GRKLNWEPLPSLSPLSGVPLLPPMVTLCIDGGKKDKLRPGDILGALTG  409 (459)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCC
T ss_conf             899864169996755678889985999993753148777888998617