HHsearch alignment for GI: 254780619 and conserved domain: PRK11776

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=95.90  E-value=0.098  Score=32.36  Aligned_cols=126  Identities=15%  Similarity=0.184  Sum_probs=86.7

Q ss_pred             EECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             84475315799999999998514684799715210013445554303897689962355723566789999719973999
Q gi|254780619|r  223 ISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIV  302 (731)
Q Consensus       223 L~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVI  302 (731)
T Consensus       221 ~~~v~~~~K~~~L~~ll~~--~~~~~~IIFcntk~~v~~l~~~L~~-~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLV  297 (459)
T PRK11776        221 FYEVDPDERLPALQRLLLH--YRPESCVVFCNTKKECQEVADALNA-QGFSALALHGDLEQRDRDQVLVRFANRSCSVLV  297 (459)
T ss_pred             EEEECHHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             9997718789999999973--6876603761748999999999986-799689987999999999999999779997998


Q ss_pred             ECCHHHH-HHHCCCEEEEE-EECCCC-CCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCC
Q ss_conf             4001211-00100013677-405532-10000244322489999975110321000024543
Q gi|254780619|r  303 GVRSALF-LPFKKLGLIVI-DEEHDI-SYKQEEGILYNARDMSIVRGKIESFPVVLVSATPS  361 (731)
Q Consensus       303 GtRSAif-~P~~nLglIIv-DEEHd~-sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPS  361 (731)
T Consensus       298 aTDvaaRGIDi~~V~~VInyDlP~~~e~YvHR-----iGR---TGRaG~~G~ait~v--t~~  349 (459)
T PRK11776        298 ATDVAARGLDIKSLEAVINYELARDPEVHVHR-----IGR---TGRAGSKGLALSLV--APE  349 (459)
T ss_pred             EHHHHHCCCCCCCCCEEEEECCCCCHHHHHHC-----CCH---HHCCCCCEEEEEEE--CHH
T ss_conf             81043476771359889997898974552020-----525---13789965799998--689