HHsearch alignment for GI: 254780619 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=95.90 E-value=0.098 Score=32.36 Aligned_cols=126 Identities=15% Similarity=0.184 Sum_probs=86.7
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 84475315799999999998514684799715210013445554303897689962355723566789999719973999
Q gi|254780619|r 223 ISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIV 302 (731)
Q Consensus 223 L~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVI 302 (731)
T Consensus 221 ~~~v~~~~K~~~L~~ll~~--~~~~~~IIFcntk~~v~~l~~~L~~-~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLV 297 (459)
T PRK11776 221 FYEVDPDERLPALQRLLLH--YRPESCVVFCNTKKECQEVADALNA-QGFSALALHGDLEQRDRDQVLVRFANRSCSVLV 297 (459)
T ss_pred EEEECHHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 9997718789999999973--6876603761748999999999986-799689987999999999999999779997998
Q ss_pred ECCHHHH-HHHCCCEEEEE-EECCCC-CCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCC
Q ss_conf 4001211-00100013677-405532-10000244322489999975110321000024543
Q gi|254780619|r 303 GVRSALF-LPFKKLGLIVI-DEEHDI-SYKQEEGILYNARDMSIVRGKIESFPVVLVSATPS 361 (731)
Q Consensus 303 GtRSAif-~P~~nLglIIv-DEEHd~-sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPS 361 (731)
T Consensus 298 aTDvaaRGIDi~~V~~VInyDlP~~~e~YvHR-----iGR---TGRaG~~G~ait~v--t~~ 349 (459)
T PRK11776 298 ATDVAARGLDIKSLEAVINYELARDPEVHVHR-----IGR---TGRAGSKGLALSLV--APE 349 (459)
T ss_pred EHHHHHCCCCCCCCCEEEEECCCCCHHHHHHC-----CCH---HHCCCCCEEEEEEE--CHH
T ss_conf 81043476771359889997898974552020-----525---13789965799998--689