HHsearch alignment for GI: 254780619 and conserved domain: PRK11823
>PRK11823 DNA repair protein RadA; Provisional.
Probab=92.54 E-value=0.057 Score=34.15 Aligned_cols=156 Identities=27% Similarity=0.374 Sum_probs=87.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC---CEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 61998447531579999999999851468479971521001344555430389---768996235572356678999971
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFG---VKPAEWHSSLSTSMREKIWRQVAR 295 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~---~~v~v~HS~ls~~eR~~~w~~i~~ 295 (731)
T Consensus 91 S~iLlgGePGIGKSTLlLQ~a~~-la~~~~vLYvSGEES~-~Qik~RA~-RLg~~~~~l~l~~----et~l~~Il~~i~~ 163 (454)
T PRK11823 91 SVVLIGGDPGIGKSTLLLQVAAA-LAAGGKVLYVSGEESL-QQIKLRAE-RLGLPSDNLYLLA----ETNLEDILATIEE 163 (454)
T ss_pred EEEEECCCCCCCHHHHHHHHHHH-HHCCCCEEEECCCHHH-HHHHHHHH-HHCCCCCCCEEEE----CCCHHHHHHHHHH
T ss_conf 48995079988899999999999-8559957998150157-89999999-7588888737885----3689999999986
Q ss_pred CCCEEEEECCHHHHHHHCCCEEEEEEECCCCCCHH--CCCCC--CCHHHHHHH---HHHHCCCCEECCCC--------CC
Q ss_conf 99739994001211001000136774055321000--02443--224899999---75110321000024--------54
Q gi|254780619|r 296 GAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQ--EEGIL--YNARDMSIV---RGKIESFPVVLVSA--------TP 360 (731)
Q Consensus 296 G~~~IVIGtRSAif~P~~nLglIIvDEEHd~sykq--~~~pr--y~aRdvA~~---Ra~~~~~~lilgSA--------TP 360 (731)
T Consensus 164 -----------------~~P~~lIIDSIQT~-~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGP 225 (454)
T PRK11823 164 -----------------EKPDLVVIDSIQTM-YSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGP 225 (454)
T ss_pred -----------------HCCCEEEEECHHEE-EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf -----------------09988999431115-415667789978999999999999997449828999977267764661
Q ss_pred -CHHHHHHH-------HHHHHHHHC-CCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf -32467753-------212344412-432236765433211022223322
Q gi|254780619|r 361 -SIESRVNG-------ISRRYHSVH-LSTRYRNSALPHLQVIDMRGQTIA 401 (731)
Q Consensus 361 -Sles~~~~-------~~g~~~~~~-l~~R~~~~~~P~i~ivDm~~~~~~ 401 (731)
T Consensus 226 kvLEHmVDtVl~fEGd~~~~~RiLR~~KNRFG~t~--EiGvFeM~~~GL~ 273 (454)
T PRK11823 226 RVLEHMVDTVLYFEGDRHSRFRILRAVKNRFGATN--EIGVFEMTEKGLR 273 (454)
T ss_pred HHHHHHHCEEEEECCCCCCCCEEEEEECCCCCCCC--EEEEEEECCCCCE
T ss_conf 45222010468751576655024563124677666--0589986168845