HHsearch alignment for GI: 254780619 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=93.05  E-value=0.66  Score=26.02  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=36.3

Q ss_pred             CHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCC--EEEEEHHHCCCCCCCCC--CHHHHHHHHHHHHH
Q ss_conf             289988885204852000102321135867899999862125765--79870443023113452--01233000344310
Q gi|254780619|r  494 GIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEID--IIIGTQLVAKGHNFPRM--SLVGVVDGDLGLTN  569 (731)
Q Consensus       494 Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~--ilvgTq~i~kg~~fp~v--~lv~il~aD~~l~~  569 (731)
T Consensus       213 ~~~~~~~~~~~-----~~~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRLii~AsEDIGlAd  287 (417)
T PRK13342        213 TLELLEEALQR-----RAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLAD  287 (417)
T ss_pred             CHHHHHHHHHH-----CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             89999999844-----1035777863478999999998516995489999999997599979999999998854403678


Q ss_pred             HH
Q ss_conf             24
Q gi|254780619|r  570 AD  571 (731)
Q Consensus       570 pd  571 (731)
T Consensus       288 P~  289 (417)
T PRK13342        288 PN  289 (417)
T ss_pred             HH
T ss_conf             78