HHsearch alignment for GI: 254780619 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=93.05 E-value=0.66 Score=26.02 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCC--EEEEEHHHCCCCCCCCC--CHHHHHHHHHHHHH
Q ss_conf 289988885204852000102321135867899999862125765--79870443023113452--01233000344310
Q gi|254780619|r 494 GIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEID--IIIGTQLVAKGHNFPRM--SLVGVVDGDLGLTN 569 (731)
Q Consensus 494 Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~--ilvgTq~i~kg~~fp~v--~lv~il~aD~~l~~ 569 (731)
T Consensus 213 ~~~~~~~~~~~-----~~~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRLii~AsEDIGlAd 287 (417)
T PRK13342 213 TLELLEEALQR-----RAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLAD 287 (417)
T ss_pred CHHHHHHHHHH-----CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999844-----1035777863478999999998516995489999999997599979999999998854403678
Q ss_pred HH
Q ss_conf 24
Q gi|254780619|r 570 AD 571 (731)
Q Consensus 570 pd 571 (731)
T Consensus 288 P~ 289 (417)
T PRK13342 288 PN 289 (417)
T ss_pred HH
T ss_conf 78