HHsearch alignment for GI: 254780619 and conserved domain: TIGR00354

>TIGR00354 polC DNA polymerase II, large subunit DP2; InterPro: IPR004475 This family represents the large subunit, DP2, of a two subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006308 DNA catabolic process.
Probab=91.36  E-value=0.082  Score=32.97  Aligned_cols=49  Identities=12%  Similarity=0.014  Sum_probs=24.3

Q ss_pred             CCCEEEEEEEEEC--CCCCCCCCHHCCCHHHHCCCCC---CCHHHHHHH-HHHHH
Q ss_conf             9968999999824--8876788011141888406689---998999999-99985
Q gi|254780619|r   49 RSRTVLGIVWYNS--EEKYKIDSLKLRPIEYVFDCPP---LSRQMCEFV-KWVAD   97 (731)
Q Consensus        49 g~r~~~GiVv~~~--~~~~~~~~~kLK~I~~VlD~~~---L~~~ll~L~-~wiA~   97 (731)
T Consensus       315 ~~Ky~sdiiaGRPVlahPS~kGgFRLRYGRaRNtGfAt~GvhPAtMyLldeF~AV  369 (1173)
T TIGR00354       315 DDKYVSDIIAGRPVLAHPSKKGGFRLRYGRARNTGFATVGVHPATMYLLDEFLAV  369 (1173)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHH
T ss_conf             7745432205875111577667611234433221201037765789988756530