HHsearch alignment for GI: 254780619 and conserved domain: TIGR00373

>TIGR00373 TIGR00373 conserved hypothetical protein TIGR00373; InterPro: IPR005241 This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. .

Probab=96.72  E-value=0.0019  Score=45.44  Aligned_cols=64  Identities=20%  Similarity=0.348  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCE
Q ss_conf             89999998862265517997422200000023565434310146520121135783200002102446555666787411
Q gi|254780619|r  408 PEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGK  487 (731)
Q Consensus       408 ~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~  487 (731)
T Consensus        93 ~e~~kkLreklEfE~nn~ff~-------------------CpN~~vrftf~e------------Ame~nFtCP~CG~~--  139 (168)
T TIGR00373        93 EELVKKLREKLEFEKNNMFFV-------------------CPNMNVRFTFDE------------AMELNFTCPECGAM--  139 (168)
T ss_pred             HHHHHHHHHHHHHHCCCEEEE-------------------ECCCEEEEEHHH------------HHCCCCCCCCCCCH--
T ss_conf             999999998742310772587-------------------138405740422------------31167988331323--


Q ss_pred             ECCCC--CCHHHHHHHHHH
Q ss_conf             00135--428998888520
Q gi|254780619|r  488 MIACG--FGIERIAEEVCE  504 (731)
Q Consensus       488 l~~~G--~Gte~~~e~l~~  504 (731)
T Consensus       140 l~~~DnSe~I~~ieee~~~  158 (168)
T TIGR00373       140 LDYLDNSELIKEIEEEVKL  158 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             2241027899999999988