HHsearch alignment for GI: 254780619 and conserved domain: TIGR00595
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=100.00 E-value=0 Score=1025.39 Aligned_cols=507 Identities=44% Similarity=0.747 Sum_probs=490.2
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf 98447531579999999999851468479971521001344555430389768996235-57235667899997199739
Q gi|254780619|r 222 LISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSS-LSTSMREKIWRQVARGAISV 300 (731)
Q Consensus 222 LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~-ls~~eR~~~w~~i~~G~~~I 300 (731)
T Consensus 1 ll~G~tGsGkte~y~~~~~~~l~~g~~~~~l~Pei~l~~q~~~~~~~~fg~~~~~~h~~~l~~~~~~~~w~~~~~g~~~~ 80 (524)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSALVLVPEIALTPQTLQRFKGRFGSQVAVLHSGKLSDSEKLDAWRKVKLGEALV 80 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 95456788616888999999973377178970421101678999999718720101001367345688999985186005
Q ss_pred EEECCHHHHHHHCCCEEEEEEECCCCCCHHCCC-CCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHH----H
Q ss_conf 994001211001000136774055321000024-43224899999751103210000245432467753212344----4
Q gi|254780619|r 301 IVGVRSALFLPFKKLGLIVIDEEHDISYKQEEG-ILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYH----S 375 (731)
Q Consensus 301 VIGtRSAif~P~~nLglIIvDEEHd~sykq~~~-pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~----~ 375 (731)
T Consensus 81 v~G~rsa~f~P~~~lglii~deehd~~yk~~~~~p~y~ar~~~~~~~~~~~~p~~lgsatP~le~~~~~~~~~~~p~~~~ 160 (524)
T TIGR00595 81 VIGTRSALFLPLKNLGLIIVDEEHDSSYKQEELPPRYHARDVAVYRAKLFNCPVVLGSATPSLESYHNAKRGKYRPQRHL 160 (524)
T ss_pred EECCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 64030343246211454787346452100136885520678898876404885788056722789999871665620321
Q ss_pred HCCCCCCCCCCCCCCEECCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCE
Q ss_conf 1243223676543321102222332224-547989999998862265517997422200000023565434310146520
Q gi|254780619|r 376 VHLSTRYRNSALPHLQVIDMRGQTIAQG-KSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCW 454 (731)
Q Consensus 376 ~~l~~R~~~~~~P~i~ivDm~~~~~~~~-~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~ 454 (731)
T Consensus 161 ~~l~~r~~~~~~p~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~f~n~rg~~~~~~c~~cg~~~~cp~c~~~ 240 (524)
T TIGR00595 161 LVLPRRVGGRKPPEVKLIDLRKEPRQGNRSFLSPELLTALEETLAAGEQAILFLNRRGYSPNLLCRSCGYVLECPNCDVS 240 (524)
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCEECCCCCEE
T ss_conf 11013205775751567622100021321022589999999887416706898615566530000026750105665302
Q ss_pred EEEECCCC----CCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 12113578----32000021024465556667874110013542899888852048520001023211358678999998
Q gi|254780619|r 455 LVEHRSKK----KLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLS 530 (731)
Q Consensus 455 l~~h~~~~----~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~ 530 (731)
T Consensus 241 ~~~h~~~~~g~p~l~ch~c~~~~~~p~~cp~c~~~~~~~~~g~G~~~~~~~l~~~~p~~~~~~~d~d~~~~~~~~~~~~~ 320 (524)
T TIGR00595 241 LTYHKKEGNGQPKLRCHYCGYQEPVPKTCPACGSEDTLKYKGLGTEKVEEELAKLFPGARIARLDSDTTSRKGAHEALLN 320 (524)
T ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 35532136886201221057667775436444664301203542789999999855887367641221235146899999
Q ss_pred HHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHH
Q ss_conf 62125765798704430231134520123300034431024557899999875431102566788689999329864888
Q gi|254780619|r 531 AIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPTHPVM 610 (731)
Q Consensus 531 ~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~iQt~~p~~~~~ 610 (731)
T Consensus 321 ~f~~g~~d~l~Gtq~~~kG~~fp~~~l~g~~~~d~~l~~~d~r~~e~~~~l~~q~~Gr~gr~~~~g~v~iqt~~P~~~~~ 400 (524)
T TIGR00595 321 QFANGKADILIGTQMIAKGHDFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGEVIIQTYNPGHPAI 400 (524)
T ss_pred HHHCCCCEEEECHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHH
T ss_conf 97507840675003443157744203677873120025542134677888888764100234688747997307751688
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCHHHHHHHHHHHHHHCC-C--CCCCEEECCCCCHHHHHCCEE
Q ss_conf 9999589799999999999981888801189998845998999999999998573-4--388499817675268858823
Q gi|254780619|r 611 QALVSGDADSFYESEIRARESVNLPPFGRLAAVIISGTKYQEVENYAYNLKEHAP-R--SSDIVVFGPAESPLFMVRGRY 687 (731)
Q Consensus 611 ~~~~~~d~~~f~~~el~~R~~~~~PPf~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~v~GP~~~~~~k~~~~~ 687 (731)
T Consensus 401 ~~~~~~~~~~f~~~~~~~r~~~~~PP~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgp~~~~~~~~~~~~ 480 (524)
T TIGR00595 401 QAALTGDYEAFYEQELAQRRALNYPPFGRLILLVFLGKNEEKAKKTAQALAELLKSALLGEGLDVLGPSPAPIAKIAGRY 480 (524)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 98760681678999887778762698310799987076335689999999975101104655311143212366651231
Q ss_pred EEEEEEECCCHHHHHHHHHHHHH---HHHHCCCCCEEEEEECCH
Q ss_conf 79999980993899999999998---642103786899970680
Q gi|254780619|r 688 RFRLLIHGKRNSNLQGFFSQMYD---NTIKRSNALRVQFDIDPQ 728 (731)
Q Consensus 688 r~~~~ik~~~~~~l~~~l~~~~~---~~~~~~~~~~~~iDvDP~ 728 (731)
T Consensus 481 r~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~dP~ 524 (524)
T TIGR00595 481 RYQILLKSPSFLKLQKLVNKTLAHLLKEIPPSPGVYVEVDVDPV 524 (524)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 02455423541467888999999888740678862588604679