HHsearch alignment for GI: 254780619 and conserved domain: TIGR00595

>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=100.00  E-value=0  Score=1025.39  Aligned_cols=507  Identities=44%  Similarity=0.747  Sum_probs=490.2

Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             98447531579999999999851468479971521001344555430389768996235-57235667899997199739
Q gi|254780619|r  222 LISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSS-LSTSMREKIWRQVARGAISV  300 (731)
Q Consensus       222 LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~-ls~~eR~~~w~~i~~G~~~I  300 (731)
T Consensus         1 ll~G~tGsGkte~y~~~~~~~l~~g~~~~~l~Pei~l~~q~~~~~~~~fg~~~~~~h~~~l~~~~~~~~w~~~~~g~~~~   80 (524)
T TIGR00595         1 LLFGVTGSGKTEVYLQAIEKVLALGKSALVLVPEIALTPQTLQRFKGRFGSQVAVLHSGKLSDSEKLDAWRKVKLGEALV   80 (524)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             95456788616888999999973377178970421101678999999718720101001367345688999985186005


Q ss_pred             EEECCHHHHHHHCCCEEEEEEECCCCCCHHCCC-CCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHH----H
Q ss_conf             994001211001000136774055321000024-43224899999751103210000245432467753212344----4
Q gi|254780619|r  301 IVGVRSALFLPFKKLGLIVIDEEHDISYKQEEG-ILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYH----S  375 (731)
Q Consensus       301 VIGtRSAif~P~~nLglIIvDEEHd~sykq~~~-pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~----~  375 (731)
T Consensus        81 v~G~rsa~f~P~~~lglii~deehd~~yk~~~~~p~y~ar~~~~~~~~~~~~p~~lgsatP~le~~~~~~~~~~~p~~~~  160 (524)
T TIGR00595        81 VIGTRSALFLPLKNLGLIIVDEEHDSSYKQEELPPRYHARDVAVYRAKLFNCPVVLGSATPSLESYHNAKRGKYRPQRHL  160 (524)
T ss_pred             EECCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf             64030343246211454787346452100136885520678898876404885788056722789999871665620321


Q ss_pred             HCCCCCCCCCCCCCCEECCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCE
Q ss_conf             1243223676543321102222332224-547989999998862265517997422200000023565434310146520
Q gi|254780619|r  376 VHLSTRYRNSALPHLQVIDMRGQTIAQG-KSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCW  454 (731)
Q Consensus       376 ~~l~~R~~~~~~P~i~ivDm~~~~~~~~-~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~  454 (731)
T Consensus       161 ~~l~~r~~~~~~p~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~f~n~rg~~~~~~c~~cg~~~~cp~c~~~  240 (524)
T TIGR00595       161 LVLPRRVGGRKPPEVKLIDLRKEPRQGNRSFLSPELLTALEETLAAGEQAILFLNRRGYSPNLLCRSCGYVLECPNCDVS  240 (524)
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCEECCCCCEE
T ss_conf             11013205775751567622100021321022589999999887416706898615566530000026750105665302


Q ss_pred             EEEECCCC----CCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             12113578----32000021024465556667874110013542899888852048520001023211358678999998
Q gi|254780619|r  455 LVEHRSKK----KLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLS  530 (731)
Q Consensus       455 l~~h~~~~----~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~  530 (731)
T Consensus       241 ~~~h~~~~~g~p~l~ch~c~~~~~~p~~cp~c~~~~~~~~~g~G~~~~~~~l~~~~p~~~~~~~d~d~~~~~~~~~~~~~  320 (524)
T TIGR00595       241 LTYHKKEGNGQPKLRCHYCGYQEPVPKTCPACGSEDTLKYKGLGTEKVEEELAKLFPGARIARLDSDTTSRKGAHEALLN  320 (524)
T ss_pred             EEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             35532136886201221057667775436444664301203542789999999855887367641221235146899999


Q ss_pred             HHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHH
Q ss_conf             62125765798704430231134520123300034431024557899999875431102566788689999329864888
Q gi|254780619|r  531 AIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPTHPVM  610 (731)
Q Consensus       531 ~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~iQt~~p~~~~~  610 (731)
T Consensus       321 ~f~~g~~d~l~Gtq~~~kG~~fp~~~l~g~~~~d~~l~~~d~r~~e~~~~l~~q~~Gr~gr~~~~g~v~iqt~~P~~~~~  400 (524)
T TIGR00595       321 QFANGKADILIGTQMIAKGHDFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGEVIIQTYNPGHPAI  400 (524)
T ss_pred             HHHCCCCEEEECHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHH
T ss_conf             97507840675003443157744203677873120025542134677888888764100234688747997307751688


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCHHHHHHHHHHHHHHCC-C--CCCCEEECCCCCHHHHHCCEE
Q ss_conf             9999589799999999999981888801189998845998999999999998573-4--388499817675268858823
Q gi|254780619|r  611 QALVSGDADSFYESEIRARESVNLPPFGRLAAVIISGTKYQEVENYAYNLKEHAP-R--SSDIVVFGPAESPLFMVRGRY  687 (731)
Q Consensus       611 ~~~~~~d~~~f~~~el~~R~~~~~PPf~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~v~GP~~~~~~k~~~~~  687 (731)
T Consensus       401 ~~~~~~~~~~f~~~~~~~r~~~~~PP~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgp~~~~~~~~~~~~  480 (524)
T TIGR00595       401 QAALTGDYEAFYEQELAQRRALNYPPFGRLILLVFLGKNEEKAKKTAQALAELLKSALLGEGLDVLGPSPAPIAKIAGRY  480 (524)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             98760681678999887778762698310799987076335689999999975101104655311143212366651231


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHH---HHHHCCCCCEEEEEECCH
Q ss_conf             79999980993899999999998---642103786899970680
Q gi|254780619|r  688 RFRLLIHGKRNSNLQGFFSQMYD---NTIKRSNALRVQFDIDPQ  728 (731)
Q Consensus       688 r~~~~ik~~~~~~l~~~l~~~~~---~~~~~~~~~~~~iDvDP~  728 (731)
T Consensus       481 r~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~dP~  524 (524)
T TIGR00595       481 RYQILLKSPSFLKLQKLVNKTLAHLLKEIPPSPGVYVEVDVDPV  524 (524)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             02455423541467888999999888740678862588604679