HHsearch alignment for GI: 254780619 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=95.03 E-value=0.063 Score=33.85 Aligned_cols=146 Identities=21% Similarity=0.332 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 88378999999987520489619984475315799999999998514-68479971521001344555430389768996
Q gi|254780619|r 199 LDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL-GKQVLILLPEISLTSAILERFQKRFGVKPAEW 277 (731)
Q Consensus 199 Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~-GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~ 277 (731)
T Consensus 10 P~GDQP~AI~~L~~~l~~G~~~QtLLGvTGsGKT----FT~AnVIa~~~rPTLV~aHNKTLAAQLY~EfKefFPeNAVEY 85 (667)
T TIGR00631 10 PAGDQPKAIAKLVEGLEAGEKEQTLLGVTGSGKT----FTMANVIAQVQRPTLVLAHNKTLAAQLYNEFKEFFPENAVEY 85 (667)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHH----HHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 6788189999999998568871478532148627----889899998479849985777679999999986386772452
Q ss_pred E-----------------------CCCC---CHHHHHHHHHHHCCCCEEEEECCHHHH---HHHCCCEEEEE-EECCCCC
Q ss_conf 2-----------------------3557---235667899997199739994001211---00100013677-4055321
Q gi|254780619|r 278 H-----------------------SSLS---TSMREKIWRQVARGAISVIVGVRSALF---LPFKKLGLIVI-DEEHDIS 327 (731)
Q Consensus 278 H-----------------------S~ls---~~eR~~~w~~i~~G~~~IVIGtRSAif---~P~~nLglIIv-DEEHd~s 327 (731)
T Consensus 86 FvSYYDYYQPEAYvP~~DtyIEKdaSINdeIerlR~SAT~SLl~RrDVIVVASVScIYGLG~P~~Y~~~~~~l~vG~~~~ 165 (667)
T TIGR00631 86 FVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRLSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEID 165 (667)
T ss_pred EEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHCCEEEEEECCCCC
T ss_conf 55203237873214798841304553004676778898886423787899987552068888255642278654078558
Q ss_pred CHHC----CCCCCCHHHHHHHHHHH
Q ss_conf 0000----24432248999997511
Q gi|254780619|r 328 YKQE----EGILYNARDMSIVRGKI 348 (731)
Q Consensus 328 ykq~----~~pry~aRdvA~~Ra~~ 348 (731)
T Consensus 166 ~~~ll~~LV~lqY~RNd~~f~RG~F 190 (667)
T TIGR00631 166 RRELLRRLVELQYERNDVDFQRGTF 190 (667)
T ss_pred HHHHHHHHHHHCEEECCEECCCCCE
T ss_conf 8999988634030571234057712