HHsearch alignment for GI: 254780619 and conserved domain: TIGR00643

>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.70  E-value=0.00028  Score=51.80  Aligned_cols=87  Identities=18%  Similarity=0.404  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEC---CCHHHH------HHHHHHHCCC-CC-EEEEEECCCCCHHHHHHHHHHHCCCCEE
Q ss_conf             99999999998514684799715---210013------4455543038-97-6899623557235667899997199739
Q gi|254780619|r  232 TEVYLEIVAAVLHLGKQVLILLP---EISLTS------AILERFQKRF-GV-KPAEWHSSLSTSMREKIWRQVARGAISV  300 (731)
Q Consensus       232 TEVYl~li~~~L~~GkqvLiLvP---EI~Lt~------Q~~~rl~~rF-~~-~v~v~HS~ls~~eR~~~w~~i~~G~~~I  300 (731)
T Consensus       514 ~~~v~~~~~~E~~~GrQaYvv~PlI~ESE~lp~lk~A~~~~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F~~~~~~I  593 (721)
T TIGR00643       514 IDIVYEFIEEEIAKGRQAYVVYPLIEESEKLPDLKAAEALYERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEFREGEVDI  593 (721)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             68999999999832890899964403200471689999999998886122100113306898478999999852158369


Q ss_pred             EEECCHHHH---HHHCCCEEEEE
Q ss_conf             994001211---00100013677
Q gi|254780619|r  301 IVGVRSALF---LPFKKLGLIVI  320 (731)
Q Consensus       301 VIGtRSAif---~P~~nLglIIv  320 (731)
T Consensus       594 LVsTT--VIEVGVDVPnAtvMVI  614 (721)
T TIGR00643       594 LVSTT--VIEVGVDVPNATVMVI  614 (721)
T ss_pred             EEEEE--EEEEEEECCCCCEEEE
T ss_conf             99976--8999861797727888