HHsearch alignment for GI: 254780619 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.70 E-value=0.00028 Score=51.80 Aligned_cols=87 Identities=18% Similarity=0.404 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEC---CCHHHH------HHHHHHHCCC-CC-EEEEEECCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 99999999998514684799715---210013------4455543038-97-6899623557235667899997199739
Q gi|254780619|r 232 TEVYLEIVAAVLHLGKQVLILLP---EISLTS------AILERFQKRF-GV-KPAEWHSSLSTSMREKIWRQVARGAISV 300 (731)
Q Consensus 232 TEVYl~li~~~L~~GkqvLiLvP---EI~Lt~------Q~~~rl~~rF-~~-~v~v~HS~ls~~eR~~~w~~i~~G~~~I 300 (731)
T Consensus 514 ~~~v~~~~~~E~~~GrQaYvv~PlI~ESE~lp~lk~A~~~~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F~~~~~~I 593 (721)
T TIGR00643 514 IDIVYEFIEEEIAKGRQAYVVYPLIEESEKLPDLKAAEALYERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEFREGEVDI 593 (721)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 68999999999832890899964403200471689999999998886122100113306898478999999852158369
Q ss_pred EEECCHHHH---HHHCCCEEEEE
Q ss_conf 994001211---00100013677
Q gi|254780619|r 301 IVGVRSALF---LPFKKLGLIVI 320 (731)
Q Consensus 301 VIGtRSAif---~P~~nLglIIv 320 (731)
T Consensus 594 LVsTT--VIEVGVDVPnAtvMVI 614 (721)
T TIGR00643 594 LVSTT--VIEVGVDVPNATVMVI 614 (721)
T ss_pred EEEEE--EEEEEEECCCCCEEEE
T ss_conf 99976--8999861797727888