HHsearch alignment for GI: 254780619 and conserved domain: TIGR01074
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=96.53 E-value=0.0041 Score=42.90 Aligned_cols=117 Identities=23% Similarity=0.323 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 688378999999987520489619984475315799999999998514-6847997152100134455543038976899
Q gi|254780619|r 198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL-GKQVLILLPEISLTSAILERFQKRFGVKPAE 276 (731)
Q Consensus 198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~-GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v 276 (731)
T Consensus 3 ~LNp~Q~~AV~Y~~G-------PlLVLAGAGSGKT~VI~~KIayLi~~cgY~a---------------------~~IaAv 54 (677)
T TIGR01074 3 KLNPQQQEAVEYVGG-------PLLVLAGAGSGKTRVITNKIAYLIQNCGYKA---------------------KNIAAV 54 (677)
T ss_pred CCCHHHHHHHHHHCC-------CCEEECCCCCCCCHHHHHHHHHHHHHCCCCC---------------------CCEEEE
T ss_conf 887437999986158-------7146517777863578889999875158787---------------------616897
Q ss_pred EECCCCCHHH-HHHHHHHHCCCCE-EEEECCHHHHHHHCCCEEEEEEECCCC-CCHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 6235572356-6789999719973-999400121100100013677405532-100002443224899999751103
Q gi|254780619|r 277 WHSSLSTSMR-EKIWRQVARGAIS-VIVGVRSALFLPFKKLGLIVIDEEHDI-SYKQEEGILYNARDMSIVRGKIES 350 (731)
Q Consensus 277 ~HS~ls~~eR-~~~w~~i~~G~~~-IVIGtRSAif~P~~nLglIIvDEEHd~-sykq~~~pry~aRdvA~~Ra~~~~ 350 (731)
T Consensus 55 TFTNKAA~EMkERVA~~L~~~~~~GL~isT-------FH~LGL~Ii~~E~~~lG~K~nFSl-FD~~D~~all~eL~~ 123 (677)
T TIGR01074 55 TFTNKAAREMKERVAKTLGKGQAKGLTIST-------FHTLGLKIIRREHNALGLKSNFSL-FDETDQLALLKELLE 123 (677)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCCCCCEEEC-------CHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHH
T ss_conf 352377799999998522654558544752-------057338999999986488999642-067889999998752