HHsearch alignment for GI: 254780619 and conserved domain: TIGR01407
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=90.32 E-value=1.4 Score=23.44 Aligned_cols=67 Identities=33% Similarity=0.275 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHH
Q ss_conf 837899999998752048-961998447531579999999999851-4684799715210013445554
Q gi|254780619|r 200 DKNQQDVVEQVVPLCTKG-FAVSLISGVTGSGKTEVYLEIVAAVLH-LGKQVLILLPEISLTSAILERF 266 (731)
Q Consensus 200 t~eQ~~a~~~i~~~~~~~-f~~~LL~GvTGSGKTEVYl~li~~~L~-~GkqvLiLvPEI~Lt~Q~~~rl 266 (731)
T Consensus 262 R~~Q~~la~~v~~~l~~Gt~~~~lIEA~tG~GKtlgYLLPal~~~~~~~~~vviST~Tk~LQ~QL~E~d 330 (944)
T TIGR01407 262 REEQLKLAELVEDELTHGTEEKSLIEAPTGTGKTLGYLLPALYLAKEEEKPVVISTATKVLQSQLLEKD 330 (944)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 388999999999984157661133023766432589999999731378885699836366565656888