HHsearch alignment for GI: 254780619 and conserved domain: TIGR01407

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=90.32  E-value=1.4  Score=23.44  Aligned_cols=67  Identities=33%  Similarity=0.275  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHH
Q ss_conf             837899999998752048-961998447531579999999999851-4684799715210013445554
Q gi|254780619|r  200 DKNQQDVVEQVVPLCTKG-FAVSLISGVTGSGKTEVYLEIVAAVLH-LGKQVLILLPEISLTSAILERF  266 (731)
Q Consensus       200 t~eQ~~a~~~i~~~~~~~-f~~~LL~GvTGSGKTEVYl~li~~~L~-~GkqvLiLvPEI~Lt~Q~~~rl  266 (731)
T Consensus       262 R~~Q~~la~~v~~~l~~Gt~~~~lIEA~tG~GKtlgYLLPal~~~~~~~~~vviST~Tk~LQ~QL~E~d  330 (944)
T TIGR01407       262 REEQLKLAELVEDELTHGTEEKSLIEAPTGTGKTLGYLLPALYLAKEEEKPVVISTATKVLQSQLLEKD  330 (944)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf             388999999999984157661133023766432589999999731378885699836366565656888