HHsearch alignment for GI: 254780619 and conserved domain: TIGR01448

>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=95.23  E-value=0.058  Score=34.13  Aligned_cols=130  Identities=21%  Similarity=0.307  Sum_probs=81.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-------------CCEEEEECCCHHHHHHH
Q ss_conf             66883789999999875204896199844753157999999999985146-------------84799715210013445
Q gi|254780619|r  197 PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLG-------------KQVLILLPEISLTSAIL  263 (731)
Q Consensus       197 ~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~G-------------kqvLiLvPEI~Lt~Q~~  263 (731)
T Consensus       349 ~~l~~~Qk~AL~~~~~~-----Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAP----TGrAA  419 (769)
T TIGR01448       349 LKLSEEQKEALKTAIQD-----KVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAP----TGRAA  419 (769)
T ss_pred             CCHHHHHHHHHHHHHCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC----CHHHH
T ss_conf             77068899999998609-----4899857788861689999999998716877553124567764887377----43788


Q ss_pred             HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHH
Q ss_conf             55430389768996235572356678999971997399940012110010001367740553210000244322489999
Q gi|254780619|r  264 ERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDMSI  343 (731)
Q Consensus       264 ~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~  343 (731)
T Consensus       420 kRl~E~TG~~a~TIHRLlG~~~~~~~~~k~~~--------------~~-~~~DL~IvDE~S-------------M~Dt~L  471 (769)
T TIGR01448       420 KRLAEVTGLEALTIHRLLGYGSDTKSENKNLE--------------DP-IDADLLIVDESS-------------MVDTWL  471 (769)
T ss_pred             HHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHC--------------CC-CCCCEEEEECCC-------------HHHHHH
T ss_conf             85110026212347786368988873211011--------------34-787769981462-------------188999


Q ss_pred             HHHHH----CCCCEECCCCC---CCHH
Q ss_conf             97511----03210000245---4324
Q gi|254780619|r  344 VRGKI----ESFPVVLVSAT---PSIE  363 (731)
Q Consensus       344 ~Ra~~----~~~~lilgSAT---PSle  363 (731)
T Consensus       472 ~~~lL~a~P~~a~lllVGD~DQLPSV~  498 (769)
T TIGR01448       472 ASSLLAAVPDHARLLLVGDADQLPSVG  498 (769)
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf             999986179777798883768889886