HHsearch alignment for GI: 254780619 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=95.23 E-value=0.058 Score=34.13 Aligned_cols=130 Identities=21% Similarity=0.307 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-------------CCEEEEECCCHHHHHHH
Q ss_conf 66883789999999875204896199844753157999999999985146-------------84799715210013445
Q gi|254780619|r 197 PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLG-------------KQVLILLPEISLTSAIL 263 (731)
Q Consensus 197 ~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~G-------------kqvLiLvPEI~Lt~Q~~ 263 (731)
T Consensus 349 ~~l~~~Qk~AL~~~~~~-----Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAP----TGrAA 419 (769)
T TIGR01448 349 LKLSEEQKEALKTAIQD-----KVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAP----TGRAA 419 (769)
T ss_pred CCHHHHHHHHHHHHHCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC----CHHHH
T ss_conf 77068899999998609-----4899857788861689999999998716877553124567764887377----43788
Q ss_pred HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHH
Q ss_conf 55430389768996235572356678999971997399940012110010001367740553210000244322489999
Q gi|254780619|r 264 ERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDMSI 343 (731)
Q Consensus 264 ~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~ 343 (731)
T Consensus 420 kRl~E~TG~~a~TIHRLlG~~~~~~~~~k~~~--------------~~-~~~DL~IvDE~S-------------M~Dt~L 471 (769)
T TIGR01448 420 KRLAEVTGLEALTIHRLLGYGSDTKSENKNLE--------------DP-IDADLLIVDESS-------------MVDTWL 471 (769)
T ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHC--------------CC-CCCCEEEEECCC-------------HHHHHH
T ss_conf 85110026212347786368988873211011--------------34-787769981462-------------188999
Q ss_pred HHHHH----CCCCEECCCCC---CCHH
Q ss_conf 97511----03210000245---4324
Q gi|254780619|r 344 VRGKI----ESFPVVLVSAT---PSIE 363 (731)
Q Consensus 344 ~Ra~~----~~~~lilgSAT---PSle 363 (731)
T Consensus 472 ~~~lL~a~P~~a~lllVGD~DQLPSV~ 498 (769)
T TIGR01448 472 ASSLLAAVPDHARLLLVGDADQLPSVG 498 (769)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 999986179777798883768889886