HHsearch alignment for GI: 254780619 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=91.71 E-value=0.19 Score=30.15 Aligned_cols=141 Identities=23% Similarity=0.331 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH-------HHHHHH----
Q ss_conf 688378999999987520489619984475315799999999998514684799715210013-------445554----
Q gi|254780619|r 198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTS-------AILERF---- 266 (731)
Q Consensus 198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~-------Q~~~rl---- 266 (731)
T Consensus 69 PvS~kRedI~~AI~~-----nQVviiAGETGSGKT---TQLPKICLELGrG~~Gl---IGHTQPRRlAAR~VA~R~AeEL 137 (1320)
T TIGR01967 69 PVSAKREDIAKAIAE-----NQVVIIAGETGSGKT---TQLPKICLELGRGSRGL---IGHTQPRRLAARSVAERVAEEL 137 (1320)
T ss_pred CHHHHHHHHHHHHHH-----CCEEEEECCCCCCCC---CCCHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 711118999999984-----898999724487620---23216777542787654---1247146889999999999983
Q ss_pred HCCCCCEEE--E-EECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHH------HCCCEEEEEEECCCCCCHHCCCCCCC
Q ss_conf 303897689--9-62355723566789999719973999400121100------10001367740553210000244322
Q gi|254780619|r 267 QKRFGVKPA--E-WHSSLSTSMREKIWRQVARGAISVIVGVRSALFLP------FKKLGLIVIDEEHDISYKQEEGILYN 337 (731)
Q Consensus 267 ~~rF~~~v~--v-~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~P------~~nLglIIvDEEHd~sykq~~~pry~ 337 (731)
T Consensus 138 gtplGe~VGYkVRF~D~v~~~----t~VKLm---------TDGiLLAE~Q~DRfL~~YDTIIIDEAHERSLNIDFLLGY- 203 (1320)
T TIGR01967 138 GTPLGELVGYKVRFEDQVSSN----TLVKLM---------TDGILLAETQQDRFLERYDTIIIDEAHERSLNIDFLLGY- 203 (1320)
T ss_pred CCCCCCCCCCEEEECCCCCCC----CEEEEH---------HHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHH-
T ss_conf 889886132036631426885----436303---------223589985200222106733651123112338899988-
Q ss_pred HHHHHHHHHHHCCCCEECCCCCCCHHHHH
Q ss_conf 48999997511032100002454324677
Q gi|254780619|r 338 ARDMSIVRGKIESFPVVLVSATPSIESRV 366 (731)
Q Consensus 338 aRdvA~~Ra~~~~~~lilgSATPSles~~ 366 (731)
T Consensus 204 LK~lL---~rRPDLKiIITSATID~ERFs 229 (1320)
T TIGR01967 204 LKQLL---PRRPDLKIIITSATIDPERFS 229 (1320)
T ss_pred HHHHC---CCCCCCCEEEECCCCCHHHHH
T ss_conf 87632---668865257400235744687